Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0494 ATGGATCGTATTGATGAACGGTTTAGGGAGCAGGTAGCAGCAATTCAACGAGTTATGCTGTTAACAAGATGCTTTAAAGTGGACAATGTTCCATGCCAAATCGATGAAGGTCTCTTCCTGGGTTCTGTTGGAGCTGCTTCGAATAAGAGTGAATTGAAAAGCTTGAATATCACTCACATTTTAACTGTGGCTAATACGTTGGATCCCGCACATCCAAATGATTTCACATATAAAGTCATTGAAGTCACGGACAAAGCAGACACAAATATAGCACAGCACTTTGATGAATGTTTCAATTTCATTGATGAAGCGAAAAGACTGGGTGGTGGTGTCTTGGTTCACTGCTTTTTGGGAAGATCCAGAAGTGTGACCATTGTGATTGCTTATATGATGAAAAAGCATGGTATGAGCCTATCTCAAGCTCTAGAACATGTGAAGAGTAGGCGGCAACACGCAGCTCCTAATTATGGTTTCATGTTACAATTACAGAACTTTGAAAAATCTCTTCGAGAACAAAGATGA 522 0.4004 MDRIDERFREQVAAIQRVMLLTRCFKVDNVPCQIDEGLFLGSVGAASNKSELKSLNITHILTVANTLDPAHPNDFTYKVIEVTDKADTNIAQHFDECFNFIDEAKRLGGGVLVHCFLGRSRSVTIVIAYMMKKHGMSLSQALEHVKSRRQHAAPNYGFMLQLQNFEKSLREQR* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0494 173 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 30 172 IPR029021 -
Vvi5g0494 173 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 28 169 - -
Vvi5g0494 173 CDD DSP 31 164 - -
Vvi5g0494 173 FunFam Dual specificity phosphatase 12 32 172 - -
Vvi5g0494 173 SMART dsp_5 30 168 IPR020422 GO:0006470|GO:0008138
Vvi5g0494 173 Pfam Dual specificity phosphatase, catalytic domain 38 167 IPR000340 GO:0008138|GO:0016311
Vvi5g0494 173 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 92 149 IPR000387 GO:0016311|GO:0016791
Vvi5g0494 173 ProSiteProfiles Dual specificity protein phosphatase domain profile. 30 171 IPR020422 GO:0006470|GO:0008138
Vvi5g0494 173 Gene3D Protein tyrosine phosphatase superfamily 25 173 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0494 Vvi-Chr5 4446873 4450229 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0494 33 170 Protein tyrosine phosphatase (PTP) family AT3G06110 62.319 5.66e-63 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0494 - - vvi:100264956 348.206