Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0493 ATGTCTCACATAGCTGTTGAGAGGAACAGGAGAAGACAGATGAATGAGCACCTCAAGGTTTTACGCTCCTTGACCCCATGTTTCTATATCAAAAGGGGAGATCAAGCATCTATAATAGGGGGAGTGATAGAATTCATCAAGGAGCTGCACCAAGTGCTGCAGTCTTTGGAGTCCAAGAAACGGAGGAAAAGTCTTAGCCCAAGCCCTGGTCCTAGCCCAAGGCCATTGCAGCTGACTTCTCAACCCGACACCCCCTTTGGATTGGAGAACTTCAAGGAACTAGGAGCATGTTGCAACTCTTCAGTTGCTGATGTTGAAGCAAAGATCTCCGGATCCAATGTCATCTTGAGAATAATATCTCGCCGCATACCGGGCCAAATCGTGAAAATAATCAATGTGTTGGAGAAATTTTCGTTTGAAGTCCTCCATCTGAACATCAGCAGCATGGAGGAAACTGTCCTATACTCCTCTGTGATAAAGATAGGACTCGAATGCCAGCTGAGTGTGGAGGAACTAGCTCTTGAAGTCCAGCAAAGCTTCCGCTCGGATGCTGTTTATGCCAATGAGATATAA 573 0.4607 MSHIAVERNRRRQMNEHLKVLRSLTPCFYIKRGDQASIIGGVIEFIKELHQVLQSLESKKRRKSLSPSPGPSPRPLQLTSQPDTPFGLENFKELGACCNSSVADVEAKISGSNVILRIISRRIPGQIVKIINVLEKFSFEVLHLNISSMEETVLYSSVIKIGLECQLSVEELALEVQQSFRSDAVYANEI* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0493 190 Gene3D - 1 64 IPR036638 GO:0046983
Vvi5g0493 190 CDD bHLH_AtFAMA_like 1 63 - -
Vvi5g0493 190 SMART finulus 4 55 IPR011598 GO:0046983
Vvi5g0493 190 Pfam Helix-loop-helix DNA-binding domain 2 49 IPR011598 GO:0046983
Vvi5g0493 190 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 49 IPR011598 GO:0046983
Vvi5g0493 190 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 67 IPR036638 GO:0046983
Vvi5g0493 190 PANTHER TRANSCRIPTION FACTOR FAMA 1 180 IPR044283 GO:0003700|GO:0010052
Vvi5g0493 190 FunFam Transcription factor MUTE 1 66 - -
Vvi5g0493 190 MobiDBLite consensus disorder prediction 60 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0493 Vvi-Chr5 4441484 4442745 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0493 1 185 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G06120 71.066 9.98e-91 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi5g0493 HLH 4.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0493 - - vvi:100256370 345.125