Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0491 ATGGGGATTTCATGGAGCAACAGAAGGAGAAACAACTATCTACAAAATCGGCCGCCGCCGCCACCGCCACCGCCGCCGCCTCAACTCCTCTCTTCTTCTTACTATTACCCTTCGGAACCACCCTCTCTCCCTCCACCTCCTCCTCCTTCAAATCCTTCGCTTCCTCAGCCGCACAACTATGCTTTTACTTCCAATCCACCTTATCCTCCACCCCCATACCCACCCCACAACCTTTATCCTGCGCATCCCCCTCCAATCTACTCTTCCTCCTACTACTGCTCTGGTCCCTACAATTCCTGCAATTATGCCAACCCCATGATGGCTCGATCCAATTACCAGCCTTACTACGCTAATCACGGCAATTACTGGCCTCCAATTCGGCCTCCAGTGGCGGCACCGCCGCCCCAGCAGCCGCCGCCCTATGTTGAACATCAGAATGCTAAGAAGGTCAGGAATGATGTGAATGTGCATAAGGATACGTTGCGACTCGAGGTCGATGAGCAGAACCCTGATCATTATTTGGTTTCTTTTATTTTCGATGCCTTATTTGATGGAAGCATCACCATTTACTACTTTGCCAAGGAAGAGTCCAACTGTAGGTTTTCTCCACTATTTCCTGAAGCCTATATGCCAGTGAGAATCCCTTTTCAGAAAGGACCTGGCCAGAAATTTCGTCAGCCTTCTGGAACTGGTATTGACTTAGGCTTCTTTGAGTTGGATGATCTCTCGAAACCATCACCTGGAGAAGATGTATTTCCTCTTGTCATCTCTGCTGAAACATCTCTCCCCCTTCATCCAACTGATGAACATAGTGGTGATCCTACGCCACGTACATCCCCTCACATGCAGATTACTCAAGCTGTCCTAGAGAAGCACAATGGGGACCCTTTCCAAGTGAGAGTAATCAGACAGATATTGTGGGTCAATGAGGTTCGCTATGAGCTGCGTGAGATATATGGAATTGCAAGCTCAGCATCAGAAGGCTTTAATGACAATGACTCTGGGAAGGAATGTGTGATTTGCATGACTGAACCAAAGGATACTGCTGTTTTACCTTGCCGACATATGTGTATGTGCAGCGAGTGTGCAAAAGAATTGAGGCTCCAGTCGAATAAGTGCCCCATATGCCGTCAGCCCATAGAGGAACTTATAGAGATTAAGATTGATAATGATCACTTTTGA 1182 0.478 MGISWSNRRRNNYLQNRPPPPPPPPPPQLLSSSYYYPSEPPSLPPPPPPSNPSLPQPHNYAFTSNPPYPPPPYPPHNLYPAHPPPIYSSSYYCSGPYNSCNYANPMMARSNYQPYYANHGNYWPPIRPPVAAPPPQQPPPYVEHQNAKKVRNDVNVHKDTLRLEVDEQNPDHYLVSFIFDALFDGSITIYYFAKEESNCRFSPLFPEAYMPVRIPFQKGPGQKFRQPSGTGIDLGFFELDDLSKPSPGEDVFPLVISAETSLPLHPTDEHSGDPTPRTSPHMQITQAVLEKHNGDPFQVRVIRQILWVNEVRYELREIYGIASSASEGFNDNDSGKECVICMTEPKDTAVLPCRHMCMCSECAKELRLQSNKCPICRQPIEELIEIKIDNDHF* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0491 393 CDD mRING-HC-C3HC5_MGRN1-like 336 377 IPR045195 -
Vvi5g0491 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 322 387 IPR013083 -
Vvi5g0491 393 MobiDBLite consensus disorder prediction 15 31 - -
Vvi5g0491 393 MobiDBLite consensus disorder prediction 38 55 - -
Vvi5g0491 393 FunFam probable E3 ubiquitin-protein ligase LOG2 322 387 - -
Vvi5g0491 393 SUPERFAMILY RING/U-box 337 383 - -
Vvi5g0491 393 ProSiteProfiles Zinc finger RING-type profile. 338 377 IPR001841 -
Vvi5g0491 393 SMART ring_2 338 376 IPR001841 -
Vvi5g0491 393 Pfam Zinc finger, C3HC4 type (RING finger) 336 382 - -
Vvi5g0491 393 PANTHER MAHOGUNIN 65 387 IPR045194 GO:0061630
Vvi5g0491 393 MobiDBLite consensus disorder prediction 1 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0491 Vvi-Chr5 4388875 4406432 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0491 121 390 C3H Transcription Factor Family AT3G06140 64.364 8.57e-120 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0491 - - vri:117914879 648.662