Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi5g0491 | ATGGGGATTTCATGGAGCAACAGAAGGAGAAACAACTATCTACAAAATCGGCCGCCGCCGCCACCGCCACCGCCGCCGCCTCAACTCCTCTCTTCTTCTTACTATTACCCTTCGGAACCACCCTCTCTCCCTCCACCTCCTCCTCCTTCAAATCCTTCGCTTCCTCAGCCGCACAACTATGCTTTTACTTCCAATCCACCTTATCCTCCACCCCCATACCCACCCCACAACCTTTATCCTGCGCATCCCCCTCCAATCTACTCTTCCTCCTACTACTGCTCTGGTCCCTACAATTCCTGCAATTATGCCAACCCCATGATGGCTCGATCCAATTACCAGCCTTACTACGCTAATCACGGCAATTACTGGCCTCCAATTCGGCCTCCAGTGGCGGCACCGCCGCCCCAGCAGCCGCCGCCCTATGTTGAACATCAGAATGCTAAGAAGGTCAGGAATGATGTGAATGTGCATAAGGATACGTTGCGACTCGAGGTCGATGAGCAGAACCCTGATCATTATTTGGTTTCTTTTATTTTCGATGCCTTATTTGATGGAAGCATCACCATTTACTACTTTGCCAAGGAAGAGTCCAACTGTAGGTTTTCTCCACTATTTCCTGAAGCCTATATGCCAGTGAGAATCCCTTTTCAGAAAGGACCTGGCCAGAAATTTCGTCAGCCTTCTGGAACTGGTATTGACTTAGGCTTCTTTGAGTTGGATGATCTCTCGAAACCATCACCTGGAGAAGATGTATTTCCTCTTGTCATCTCTGCTGAAACATCTCTCCCCCTTCATCCAACTGATGAACATAGTGGTGATCCTACGCCACGTACATCCCCTCACATGCAGATTACTCAAGCTGTCCTAGAGAAGCACAATGGGGACCCTTTCCAAGTGAGAGTAATCAGACAGATATTGTGGGTCAATGAGGTTCGCTATGAGCTGCGTGAGATATATGGAATTGCAAGCTCAGCATCAGAAGGCTTTAATGACAATGACTCTGGGAAGGAATGTGTGATTTGCATGACTGAACCAAAGGATACTGCTGTTTTACCTTGCCGACATATGTGTATGTGCAGCGAGTGTGCAAAAGAATTGAGGCTCCAGTCGAATAAGTGCCCCATATGCCGTCAGCCCATAGAGGAACTTATAGAGATTAAGATTGATAATGATCACTTTTGA | 1182 | 0.478 | MGISWSNRRRNNYLQNRPPPPPPPPPPQLLSSSYYYPSEPPSLPPPPPPSNPSLPQPHNYAFTSNPPYPPPPYPPHNLYPAHPPPIYSSSYYCSGPYNSCNYANPMMARSNYQPYYANHGNYWPPIRPPVAAPPPQQPPPYVEHQNAKKVRNDVNVHKDTLRLEVDEQNPDHYLVSFIFDALFDGSITIYYFAKEESNCRFSPLFPEAYMPVRIPFQKGPGQKFRQPSGTGIDLGFFELDDLSKPSPGEDVFPLVISAETSLPLHPTDEHSGDPTPRTSPHMQITQAVLEKHNGDPFQVRVIRQILWVNEVRYELREIYGIASSASEGFNDNDSGKECVICMTEPKDTAVLPCRHMCMCSECAKELRLQSNKCPICRQPIEELIEIKIDNDHF* | 394 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi5g0491 | 393 | CDD | mRING-HC-C3HC5_MGRN1-like | 336 | 377 | IPR045195 | - | |
Vvi5g0491 | 393 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 322 | 387 | IPR013083 | - | |
Vvi5g0491 | 393 | MobiDBLite | consensus disorder prediction | 15 | 31 | - | - | |
Vvi5g0491 | 393 | MobiDBLite | consensus disorder prediction | 38 | 55 | - | - | |
Vvi5g0491 | 393 | FunFam | probable E3 ubiquitin-protein ligase LOG2 | 322 | 387 | - | - | |
Vvi5g0491 | 393 | SUPERFAMILY | RING/U-box | 337 | 383 | - | - | |
Vvi5g0491 | 393 | ProSiteProfiles | Zinc finger RING-type profile. | 338 | 377 | IPR001841 | - | |
Vvi5g0491 | 393 | SMART | ring_2 | 338 | 376 | IPR001841 | - | |
Vvi5g0491 | 393 | Pfam | Zinc finger, C3HC4 type (RING finger) | 336 | 382 | - | - | |
Vvi5g0491 | 393 | PANTHER | MAHOGUNIN | 65 | 387 | IPR045194 | GO:0061630 | |
Vvi5g0491 | 393 | MobiDBLite | consensus disorder prediction | 1 | 67 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vvi5g0491 | Vvi-Chr5 | 4388875 | 4406432 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vvi5g0491 | 121 | 390 | C3H Transcription Factor Family | AT3G06140 | 64.364 | 8.57e-120 | 350 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi5g0491 | - | - | vri:117914879 | 648.662 |