Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0486 ATGATGAGGACTATCTTGTCTGCCTGCAAGCAAGCACAGACGCCCCTACTGGATATTTCAGGGCTCAACATGGAGCTCTTCAATCCGCGGCGCCGGAAGGAGAAGGTGGTGTTCGTGATAGGAGCCACCGGCACGGGGAAATCGAAGCTTTCGATTGACCTCGCCACGCGTTTTCCATCTGAAATCATAAACTCCGACAAAATGCAAGTCTACAAGGGCCTTCACATAGTCACGAATAAGGTGACAGAGGAGGAGTGTCGCGGCGTCCCTCACCATTTGTTGGGGATAGCTGATCCTAATACCAACTTCACCGCCATGGATTTCTGCCATCACGCATCACTAGCCATCCAATCCATCACCGCTCGCAACCGCCATCCCATCATCGCCGGTGGCTCCAATTCATTCATTGAAGCTCTAGTGACTGACGTCCCTGAATTCAAATCAAGGTACGAGTGCTGCTTCCTCTGGGTTGACGTCTCATTGCCTGTACTTCACCGCTTTGTATCAGAGCGAGTTGATCGGATGTTGGAGGCGGGGTTGGTGGAGGAAGTAAGAAGAATCTTCGACCCGGAGGCCGATTACTCACGGGGAATTAGGCGGGCAATTGGAGTTCCGGAAATGGATCAATTTCTAAGAGGCGAAAGAATTGTTGGGGATAAAATTGCAGCTCAGTATCTGAGAAAAGCCATTGCTAAAATCAAAGAGAACACCTGCAAACTAGCTTGTTCCCAATTAGACAAAATTCACCGGCTGCAGAACATCAGGGGATGGAAAATACATCGCCTGGACGCCACTGAAGCCTTCCTAAAACGAGGGGACGACGCCGAGGAAGCGTGGGAGAAGCACGTGGCAGGGCCGAGCATGGACATCGTCGGCTGTTTCCTCCGCCACCAAGACTGTGTGCCCAACATTGTGGTTCCGGTTCCGGTTCCGTCCACTGCCATCATCGGCTCCACCGTGCCCATGACCGCTGTGGCGGCCGCAAGTCACTAA 993 0.5257 MMRTILSACKQAQTPLLDISGLNMELFNPRRRKEKVVFVIGATGTGKSKLSIDLATRFPSEIINSDKMQVYKGLHIVTNKVTEEECRGVPHHLLGIADPNTNFTAMDFCHHASLAIQSITARNRHPIIAGGSNSFIEALVTDVPEFKSRYECCFLWVDVSLPVLHRFVSERVDRMLEAGLVEEVRRIFDPEADYSRGIRRAIGVPEMDQFLRGERIVGDKIAAQYLRKAIAKIKENTCKLACSQLDKIHRLQNIRGWKIHRLDATEAFLKRGDDAEEAWEKHVAGPSMDIVGCFLRHQDCVPNIVVPVPVPSTAIIGSTVPMTAVAAASH* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0486 330 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 33 294 IPR039657 -
Vvi5g0486 330 FunFam Adenylate isopentenyltransferase 5, chloroplastic 33 183 - -
Vvi5g0486 330 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 146 IPR027417 -
Vvi5g0486 330 Gene3D - 33 295 IPR027417 -
Vvi5g0486 330 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 161 259 - -
Vvi5g0486 330 FunFam Adenylate isopentenyltransferase 5, chloroplastic 161 259 - -
Vvi5g0486 330 Pfam IPP transferase 147 245 - -
Vvi5g0486 330 Pfam IPP transferase 69 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0486 Vvi-Chr5 4315778 4316770 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0486 148 295 C2H2 Transcription Factor Family AT2G27760 37.143 3.21e-28 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0486 K10760 - vvi:100249482 652.514