Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0485 ATGGCCCTGTTTGGGTGGTCTCCATCGTCGTTCTCATTGCTTCAATCCCATAAACATTCTTCTAAAACCCTAATTACAGTTTCAACAACCACCAATCGCAAAATCCATCCAGTTTCAATCTCGTCTGCGTCGCCCGGTCTCCGTTATCCATGTCTCCGGTGCTGCGCAACTGACGATGAATCTTCTTCAACAAGAATCTTTATAAAAGGACTGCCACAATCCACCTGTGAGGGAAGTCTGAAGAAGGCATTTTCACAGTTTGGGGAAGTCAGCAAAGTGAGAATCAAGAGAAATAAAATTTCTTCTCAACCTTTGGGATTTGCATTTGCTTGGTTTACAACTGAAGAATCTGCTCAATTGGCTGTGAAAATGATGGATGGAAAGTTTTTTCATGGCAGGTTTGTATTTGTTAAAATTGCTAAGCCTGGACCTTCCAAAAGGCATGTGAAGGCAGCACCATACAAGTTCTAA 471 0.4225 MALFGWSPSSFSLLQSHKHSSKTLITVSTTTNRKIHPVSISSASPGLRYPCLRCCATDDESSSTRIFIKGLPQSTCEGSLKKAFSQFGEVSKVRIKRNKISSQPLGFAFAWFTTEESAQLAVKMMDGKFFHGRFVFVKIAKPGPSKRHVKAAPYKF* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0485 156 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 27 145 - -
Vvi5g0485 156 SMART rrm1_1 65 138 IPR000504 GO:0003723
Vvi5g0485 156 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 66 134 IPR000504 GO:0003723
Vvi5g0485 156 CDD RRM_SF 66 138 - -
Vvi5g0485 156 Gene3D - 56 153 IPR012677 -
Vvi5g0485 156 SUPERFAMILY RNA-binding domain, RBD 59 147 IPR035979 GO:0003676
Vvi5g0485 156 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 64 142 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0485 64 147 Eukaryotic Initiation Factors Gene Family AT2G36660 30.952 4.63e-08 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0485 - - csin:114295012 144.821