Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0476 ATGGAGTCTGATTTACACCAGGTTATTAAAGCAAATGATGATTTGACTCCAGAACATTATCAATTTTTTCTTTATCAGCTTCTGCGAGGCTTGAAGTACATACACACAGCAAATGTCTTTCATCGGGATCTGAAACCAAAGAACATCTTAGCAAATGCTGACTGCAAACTCAAGATCTGTGACTTTGGTCTTGCAAGAGTAGCCTTTAATGATACTCCGACTGCTATATTTTGGACAGATTATGTTGCAACAAGGTGGTACAGGGCACCTGAATTGTGTGGTTCATTTTTCTCCAAGTATACACCAGCAATAGATATATGGAGCATTGGATGCATCTTTGCAGAGCTTTTAACTGGAAAACCTCTCTTTCCTGGAAAAAATGTTGTTCACCAATTGGATCTGATGACTGATCTCTTGGGAACCCCGTCTGCAGAAGCCATTGCTAGGGTACGCAATGAGAAGGCTCGGAGATATTTAAGCAGCATGCGGAAGAAAAAGCCCATTCCCTTGTCCCAGAAATTCCCAAATGCAGATCCCCTTGCACTCCGTTTGCTGGAAAGAATGCTAGCATTTGAACCCAAGGACCGACCTTCCGCTGAAGAGGCTCTTGCAGATCCATATTTTAAAGGTTTAGCCAAGGTTGAGAGAGAACCCTCTGCTCAACCAGTTACCAAGTTGGAATTTGAATTTGAGAGGAGAAGGATAACTAAAGAAGACGTACGAGATCTCATTTACCGAGAGATTCTTGAGTACCATCCAAAGATGTTGAAAGAGTACTTAGAGGGAACCGAACCAACAAGCTTCATGTATCCAAGTGCTGTTGACCAGTTCAAGAAGCAATTCGCTTACCTCGAGGAGCACTACGGAAATGGTGCAACTGTTGCTCCACCTGAGAGACAACATGCATCATTACCAAGGCCATGTGTATTATATTCAGATAATTCATTACATAATTCAGCAGAGGTCGCAGATGATCTCTCCAAATGTTGCATTAAGGAAGTCGAGAAGCCACATATGGACAGGAGTTGTGGAATCCCCATGGCAAGGCTTCCTCTCCAAGTTCCTCAAAGTACCCAAGGAGGTGCTGCAAGGCCTGGAAAGGTTGTTGGTTCAGTGTTGCGTTACAACAACTGTGGAGCAGCTGCAGCAGCAGAGGTTCTTGAACAGCGGAGAATGGTTAGGAATCCACCTGTCGCAAGTCAATATAATGCGTCTAGCTGTTCATATCCAAGAAGAAACTCGAGCTGTAAAAATGAGAGAGGAGACAATGAAGGGGTAGAAGGATCTAATGGGTTGCAGCCAAAGCCTCAATACATGGCAAGGAAAGTGGCTGCTGCTCAAGGTGGATCTGGAAGTCACTGGTACTAA 1368 0.4401 MESDLHQVIKANDDLTPEHYQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAELLTGKPLFPGKNVVHQLDLMTDLLGTPSAEAIARVRNEKARRYLSSMRKKKPIPLSQKFPNADPLALRLLERMLAFEPKDRPSAEEALADPYFKGLAKVEREPSAQPVTKLEFEFERRRITKEDVRDLIYREILEYHPKMLKEYLEGTEPTSFMYPSAVDQFKKQFAYLEEHYGNGATVAPPERQHASLPRPCVLYSDNSLHNSAEVADDLSKCCIKEVEKPHMDRSCGIPMARLPLQVPQSTQGGAARPGKVVGSVLRYNNCGAAAAAEVLEQRRMVRNPPVASQYNASSCSYPRRNSSCKNERGDNEGVEGSNGLQPKPQYMARKVAAAQGGSGSHWY* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0476 455 SUPERFAMILY Protein kinase-like (PK-like) 2 212 IPR011009 -
Vvi5g0476 455 MobiDBLite consensus disorder prediction 400 435 - -
Vvi5g0476 455 Gene3D Transferase(Phosphotransferase) domain 1 3 231 - -
Vvi5g0476 455 Gene3D Phosphorylase Kinase; domain 1 1 253 - -
Vvi5g0476 455 SMART serkin_6 1 208 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0476 455 MobiDBLite consensus disorder prediction 400 414 - -
Vvi5g0476 455 ProSiteProfiles Protein kinase domain profile. 1 208 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0476 455 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 1 252 - -
Vvi5g0476 455 FunFam Mitogen-activated protein kinase 3 231 - -
Vvi5g0476 455 Pfam Protein kinase domain 3 208 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0476 Vvi-Chr5 4206297 4213904 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0476 1 455 MAP Kinase Gene Family AT5G19010 78.970 0.0 746
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Vvi5g0476 Pkinase 6.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0476 - K04371 vvi:100246022 933.71