Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0475 ATGGGCACGGTTAGGGCTTGCAGAGAGACCTCGAAACCCTCGACATCGTCACCGCCTCCGGTCACTACCACCTCCACCTCCCGATCGGAAACCGTGAATGGCTCGCACGAATTCAAAATCGATGGCTATTCGCTAGCGAAAGGGATGGGGATTGGGAGATACATCGCTTCCGACACATTCATGGTGGGCGGATACGCCTGGGCTATTTATTTTTACCCGGACGGCAAGAGCGTGGAGGATAATGCGCAGTACGTGTCGCTGTTCATCGCGTTGGCCAGCGAGGGCACGGACGTAAGGGCGCTGTTTGAATTGTCGCTTTTGGATCAGAGCGGGAAGGATCGACATAAGGTGCATAGCCATTTTGGTCGCTTTCTCGAGAGTGGCCCGTACACCCTTAAATACCGAGGAAGTATGTGGGGTTATAAGCGCTTTTTTAAAAGAACTGCTCTGGAGACATCAGACTACCTCAAAAATGATTGCCTTTTGATTCGATGTAGTGTTGGTGTCGTTAAGTCATATACAGAGGGACCAAAGATTTACACAATTGCAGTAATGCCATCTAACATTGGTCAGCATTTTGGCCAACTTTTAGAAAGTGGAAAGGGAACTGATGTAAATTTTGAAGTTGATGGAGAAATTTTTTCTGCCCATAAGTTGGTTCTTGCAGCACGTTCACCTGTCTTTAGGGCACAACTTTTTGGTCCAATGAAGGATTGCAACACTCAGCTTATCAAAATTGAAGATATGGAGGCCCCTGTTTTTAAGGTTTCACTCTCTCTATCTCTCTCACTCACTTGCTCTCTCTCACACACACCCACACACATACCAGCTGCCAAAACATGTGTCATGCATGATATCTTTGTTACTATGCCAAATTCAATATTCCTACTTATGAAACGATAG 903 0.464 MGTVRACRETSKPSTSSPPPVTTTSTSRSETVNGSHEFKIDGYSLAKGMGIGRYIASDTFMVGGYAWAIYFYPDGKSVEDNAQYVSLFIALASEGTDVRALFELSLLDQSGKDRHKVHSHFGRFLESGPYTLKYRGSMWGYKRFFKRTALETSDYLKNDCLLIRCSVGVVKSYTEGPKIYTIAVMPSNIGQHFGQLLESGKGTDVNFEVDGEIFSAHKLVLAARSPVFRAQLFGPMKDCNTQLIKIEDMEAPVFKVSLSLSLSLTCSLSHTPTHIPAAKTCVMHDIFVTMPNSIFLLMKR* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0475 300 Gene3D Potassium Channel Kv1.1; Chain A 172 281 IPR011333 -
Vvi5g0475 300 ProSiteProfiles MATH/TRAF domain profile. 33 167 IPR002083 GO:0005515
Vvi5g0475 300 SMART math_3 38 150 IPR002083 GO:0005515
Vvi5g0475 300 SUPERFAMILY TRAF domain-like 30 169 - -
Vvi5g0475 300 MobiDBLite consensus disorder prediction 8 32 - -
Vvi5g0475 300 SUPERFAMILY POZ domain 180 259 IPR011333 -
Vvi5g0475 300 Pfam BTB/POZ domain 194 255 IPR000210 GO:0005515
Vvi5g0475 300 MobiDBLite consensus disorder prediction 1 32 - -
Vvi5g0475 300 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 32 171 IPR008974 GO:0005515
Vvi5g0475 300 ProSiteProfiles BTB domain profile. 203 270 IPR000210 GO:0005515
Vvi5g0475 300 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 24 258 IPR045005 GO:0016567
Vvi5g0475 300 CDD MATH 34 167 IPR002083 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0475 Vvi-Chr5 4194276 4198077 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vvi5g0475 BTB 1.3e-13 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0475 K10523 - vvi:100240933 488.804