Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0468 ATGCGTGGAATTGGGATAACAAATAATTTGCATGTGGAGAATGAAGGATTGTCAAAGCTTGAACCCTATGTGGGGTTAGAATTTAATTCAGCAGACGATGCCCGGGAATTTTACAGTTTGTATGCGGCACATACTGGGTTTAAAATCCGGATTGGTCAGCTCTATCGATCAAGATCTAATGGGTCTGTTTCATCTCGAAGATTTGTGTGCTCCAAGGAGGGATTTCAGCTCCATTCAAGAACAGGTTGTCTGGCATTCATAAGGGTACAGAGGGTTGAATCTGGGAAATGGGTTATTGACAATTTCAAGAAGGATCACAATCATGAACTTGAACCTACAGAGGAAATGTGCCTGAGCCGGATACAGCCGGCTGCAAAATCTTTAGTTAATGGGACCTATAGGCAGGGAATTAGGTTGCTTGAGGAAGAGGAGGATGAAAACCATTTCCCATCTGGCATCATCAACTTCAAACGCCTGAAGACGGGAGAGAGGGAAGGTGGTGAAGCCATGGTCGAACCATATTTAGGTCAGGAGTTCAGTTCAGCAAATGAAGCATACAAAAATTACAATGCTTATGCAGCTAGTACAGGGTTCAAAATTCGGATTGGCCAGTTGTTTCGTTCAAGGGATGATGGGTTAATTACATGCCGAAGATTTGTCTGCTCAAAGGAAGGACATCAACATTCTTCAAGAGTAGGATGTGGGGCATTCATAAGGGTAAAGAGACAAGATTCAGGAATGTGGGTAGTGGACCGTTTCATCAAAGAACATAATCATGATCTTGATCCTCCAAGGGAAGCCGATAAGAAAATCCCTACCGCTTTGATAGGATTCAGAGATGACACTAGTGGTGGATTGGAAAACTTGGGTTCAGTCGAGACAAATGACGGGAGTCATATGAAAAGAAGTCAAGAAAGTAATATTGGAAGCGATTGGTATGATGTTCTCCTCGAGTATTTTCAATCCCGGCAAGTAGAAGATACAGGATTCTTTTATGCTGTAGAACTGGATGATGGCAGATGCAGGAGTGTGTTCTGGGCTGATGGCAGGTCTAGATTTTCATGCAGCCAGTTTGGTGACGCCATTGTTTTTGACACCTCATACAGGAAAAGTAACTATTTGGTGCCATTTGCTATGTTCATCGGAGTTAACCATCACAGACAACCAGTGCTTCTTGGGTGTGCTTTAATTGCTGATGAATGTAAGGAGTCCTTTACTTGGGTGCTCAGAACTTGGTTTAGGGCAATGTCTGGCCGCCATCCACAGTCCATAATAGCAGATCAAGACAAGGCCATCCGACAAGCGATTGCCCAAGTATTCCCAGGGATCCATCATCGATTCTCAGCATGGCAAATCAAGGCAAAGGAGCGGGAGAACCTGGGCCGTCTACTTTCCATAGACAGTGGTTTTAAATATGACTATGACAAGTGCATTTATCAGAGTCAAACAGCTGGTGAATTTGATGCTGCATGGAATGCACTCCTCAACAAATACCGCATGAAGGGGAATGCTTGGCTAAAAGAAATGTATGAGAAGCGTGAAAGTTGGGTTCCACTGTACTTAAGGGGCACCTTCTTTGCCGGAATCCCAGTGAATGGAGGTATTAAGTCATTCTTTGGTACACTTTTAAACGCCCAAACACCACTTAGAGAGTTTATTTTACAGTATGAAAGAGGTCTTGAGCGACGCCGTGAGGAGGAAAGACAAGATGATTTTGATTCTTCTAATTTGCAGGCATATTTGCACACAAAAGAAATGATAGAAGAACAATGTAGAAGGCTTTACACACTCACTGTTTTCAAAGTGTTTCAGAAAGAACTTCTGGATAGCTATGGCCATCTTGGAATGAAGATTTCTGAAGAAGGGATCATCAGTAGATATTTGGTGCGGAAGTGTGCAAACGACAATGAGAAACATATAGTTACCCTCAATGGATCCAACCTGAATGTGTTTTGTAGCTGTCAAATGTTTGAATTTGAAGGTGTGCTGTGTAGACATATTTTGAAAGTCTTCCAGATGGTGAACATAAGGGACATTCCATCTTGCTACATCCTACACCGGTGGACAAAAAATGCCAAGTATGGTTTTGTGGGTGATGTTGAATCAGACTCAGGAGGTAGCTCCCAAGATCTCAAGGCCATGATGGTATGGGGTTTAAGAGAAGAAGCCTGTAACTACATTGGGGCTGGGGCTGCATCTCTTGAAAGGTACAAACTTGCCCTAGAGATTATGCTAGAAGGTAGAAGAAAAATTAGTCAGCAAAACTAA 2268 0.4281 MRGIGITNNLHVENEGLSKLEPYVGLEFNSADDAREFYSLYAAHTGFKIRIGQLYRSRSNGSVSSRRFVCSKEGFQLHSRTGCLAFIRVQRVESGKWVIDNFKKDHNHELEPTEEMCLSRIQPAAKSLVNGTYRQGIRLLEEEEDENHFPSGIINFKRLKTGEREGGEAMVEPYLGQEFSSANEAYKNYNAYAASTGFKIRIGQLFRSRDDGLITCRRFVCSKEGHQHSSRVGCGAFIRVKRQDSGMWVVDRFIKEHNHDLDPPREADKKIPTALIGFRDDTSGGLENLGSVETNDGSHMKRSQESNIGSDWYDVLLEYFQSRQVEDTGFFYAVELDDGRCRSVFWADGRSRFSCSQFGDAIVFDTSYRKSNYLVPFAMFIGVNHHRQPVLLGCALIADECKESFTWVLRTWFRAMSGRHPQSIIADQDKAIRQAIAQVFPGIHHRFSAWQIKAKERENLGRLLSIDSGFKYDYDKCIYQSQTAGEFDAAWNALLNKYRMKGNAWLKEMYEKRESWVPLYLRGTFFAGIPVNGGIKSFFGTLLNAQTPLREFILQYERGLERRREEERQDDFDSSNLQAYLHTKEMIEEQCRRLYTLTVFKVFQKELLDSYGHLGMKISEEGIISRYLVRKCANDNEKHIVTLNGSNLNVFCSCQMFEFEGVLCRHILKVFQMVNIRDIPSCYILHRWTKNAKYGFVGDVESDSGGSSQDLKAMMVWGLREEACNYIGAGAASLERYKLALEIMLEGRRKISQQN* 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0468 755 ProSiteProfiles Zinc finger SWIM-type profile. 639 675 IPR007527 GO:0008270
Vvi5g0468 755 SMART 26again6 650 677 IPR006564 GO:0008270
Vvi5g0468 755 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 9 120 IPR031052 GO:0006355
Vvi5g0468 755 Pfam SWIM zinc finger 641 675 IPR007527 GO:0008270
Vvi5g0468 755 Pfam MULE transposase domain 362 454 IPR018289 -
Vvi5g0468 755 Pfam FAR1 DNA-binding domain 189 262 IPR004330 -
Vvi5g0468 755 Pfam FAR1 DNA-binding domain 36 111 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0468 Vvi-Chr5 4124621 4126888 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vvi5g0468 MULE 6e-24 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0468 - - vvi:100245967 1501.49