Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0459 ATGGGCTGTGTCCATGGAAAGTGCTGTAGTCGTTACCCACCATCATCAAACGGTGATTCCCGGGACTACCGTGAAAGGGGCCGGTATGGTGGAAGGCACATAATCTCAGACAGGTTGTTGGAGTGTGTTGCTGTTCCTTCTCATAACTTCAATTTGGAGTACTCGGTCCTATCGCAGCGTGGCTACTACCCTGACTCGCCAGATAAAGAAAATCAAGACAGTTACATCATCAAAACAGAAATTCAAGGTAACCCCAACGTCCATTTCTTCGGGGTATTTGATGGCCATGGGCAATTCGGTGCTCAGTGTTCGAATTTTGTTAAGGACAGGTTAGTAGAAGTACTATCAAATGATCCCACATTGTTAGATGATCCTGTAAAAGTTTATAATTCAGCCTTTTTAGTGACAAATTCCGAACTACACAATAGTGAGATAGATGATTCAATGAGTGGTACAACGGCGATTACGGTCCTTCTTATTGGGAATACCCTTTTTGTTGCAAATGTGGGTGATTCAAGGGCTGTGATTGCAGTTAAGGAGGGGAATCGAATTATTGCAGAAGATCTGTCTTATGATCAGACACCATTTAGAAAAGATGAATATGATAGAGTGAAGCTTTGTGGGGCCAGGGTTCTGAGTGTGGATCAAGTGGAAGGGCTTAAGGACCCAGATATTCAAACATGGGGTGATGAAGAAACTGAAGGAAGCGATCCTCCAAGGTTGTGGGTACAGAATGGTATGTACCCTGGGACTGCATTTACAAGGAGTGTAGGAGATGGTACAGCTGAGAAAATTGGTGTGATTGCTGTTCCTGAGGTGTCAATGATTGAGCTTGCATCCAATCATCTGTTTTTTGTTGTTGCAAGTGATGGGGTTTTTGAGTTTCTCTCCAGCCAGACCGTTGTCGAGATGGTGGCAAGATATCCAGATCCTAGAGATGCATGTGCAGCCATTGCTGGAGAATCATACAAACTATGGTTGGAGCATGAAAATCGAACTGATGATATAACAATCATCATTGTACACATTAGAGACCTATCTGATGTGCCAATACCATGGCTATCTTGA 1068 0.4345 MGCVHGKCCSRYPPSSNGDSRDYRERGRYGGRHIISDRLLECVAVPSHNFNLEYSVLSQRGYYPDSPDKENQDSYIIKTEIQGNPNVHFFGVFDGHGQFGAQCSNFVKDRLVEVLSNDPTLLDDPVKVYNSAFLVTNSELHNSEIDDSMSGTTAITVLLIGNTLFVANVGDSRAVIAVKEGNRIIAEDLSYDQTPFRKDEYDRVKLCGARVLSVDQVEGLKDPDIQTWGDEETEGSDPPRLWVQNGMYPGTAFTRSVGDGTAEKIGVIAVPEVSMIELASNHLFFVVASDGVFEFLSSQTVVEMVARYPDPRDACAAIAGESYKLWLEHENRTDDITIIIVHIRDLSDVPIPWLS* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0459 355 SUPERFAMILY PP2C-like 38 345 IPR036457 -
Vvi5g0459 355 ProSitePatterns PPM-type phosphatase domain signature. 89 97 IPR000222 GO:0043169
Vvi5g0459 355 FunFam Phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 48 345 - -
Vvi5g0459 355 CDD PP2Cc 69 343 IPR001932 -
Vvi5g0459 355 Gene3D - 40 345 IPR036457 -
Vvi5g0459 355 SMART PP2C_4 49 341 IPR001932 -
Vvi5g0459 355 Pfam Protein phosphatase 2C 77 310 IPR001932 -
Vvi5g0459 355 ProSiteProfiles PPM-type phosphatase domain profile. 53 343 IPR001932 -
Vvi5g0459 355 PANTHER PROTEIN PHOSPHATASE 69 342 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0459 Vvi-Chr5 4056267 4059688 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0459 1 348 PP2C-type Phosphatase Gene Family AT3G06270 74.286 0.0 530
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0459 - - vvi:100264845 696.427