Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0446 ATGGAAGATGTCCGAGAACCTTCAGCTTCTCCTTGTGTGGGTTCCGGCAACATTGGGGGAGAAAATGCGGAAGGGAAGGTTCATCCTGTTGCAGATGGAGAACACCTTTCCAGTCTCTCTGTCTCGATTTCGGCTGAAGACTCAGCAACTCTAAATATGGAGGAGAGAAAGGAGGGGCCTTCTCCAAGAGGAGTTCTTGAGGGCTGCTTAAGAAGTGTAGAATCTGAAACAGCTTCTTCCAAGGCCAGTACTTCAGACTCAGAAACTCCCTCGAATACAAGATCTGCTTCTAACTGGCATAGATTCTCCCAGTTATTTAAAAAAGGATCTGCAATGGGCTTGCAAACCTTACCTTCCCTAGGCATCCGGAAGCTCTCAAGAAGTAAAAGCAGAAGGGCAAGAGGAAGCATGATTCCAGCACTGTATCCCTCTTTAGATGCTGGATTATGCTTAATGAAACCTTCATGGAAAGCTTTCTCGTTATCAGAGCTTGAAACTGCAACTGACAATTTCAGCCATAAGAATTTAATTGGAGAAGGAGGATATGCTGAAGTTTACAAGGGACAATTGCAAGATGGGCAGTTTGTTGCGATCAAGCGTATTATCAGAGGAACCCCAGAAGAGATGACAGTAGACTTCTTATCCGAGCTCGGGATTATAGTCCATATTGACCATCCCAATACAGCTAAATTAGTTGGTTATGGTGTTGAAGGCGGAATGCACCTTGTTCTTTATTTGTCTCCTCATGGGAGCTTAGCTTCCCTCCTATACAGCCCGGAGAAGAAGCTAGAATGGGAAATCAGATACAAGATTGCTTTAGGGACAGCTGAGGGCCTTGGTTATCTTCATGAGGGGGGCCAAAGAAGAATCATCCACAGAGACATAAAGGCTTCTAATATTTTGCTTAAAGAGGATTTTGAGCCTCAGATTTCTGATTTTGGGCTTGCAAAGTGGCTACCTGAGCAGTGTACTCACCATATTGTATCAGGATTTGAAGGCACTTTCGGCTACCTTCCTCCTGAGTACTTCTTGCATGGCATAGTCGATGAAAAGACAGATGTATATGCCTACGGAGTGCTACTATTAGAGCTCATCACCGGACGCCCAGCTCTGGATAGCTCACAGAAAAGCCTTGTGATGTGGGCCAAACCTTTGCTTATTAACAATAGTATTGATGAGCTTGTTGATCCAAGGCTTGCCGACGCTTACGACTCAGAACAGATGAACATTGTGGCTACAGTCTCTAGTTTGTGCCTTCATCAGTCTTCTGTTCAACGACCTCGAATGAACCAGGTGGTGCAGGTTCTAAAAGGTAGAGAAGACATTTCCACCCTTGGAAAGCGATACCAAAAGCCTATTCTCCAGAGGACATATTCTGAGGAGCTCCTTGATGCTGAAGAATACAACTCAACAAAGCACTTGAACGATCTGAGTAGGCATATGGAGATTCTTTTGGAGATCTAA 1464 0.4467 MEDVREPSASPCVGSGNIGGENAEGKVHPVADGEHLSSLSVSISAEDSATLNMEERKEGPSPRGVLEGCLRSVESETASSKASTSDSETPSNTRSASNWHRFSQLFKKGSAMGLQTLPSLGIRKLSRSKSRRARGSMIPALYPSLDAGLCLMKPSWKAFSLSELETATDNFSHKNLIGEGGYAEVYKGQLQDGQFVAIKRIIRGTPEEMTVDFLSELGIIVHIDHPNTAKLVGYGVEGGMHLVLYLSPHGSLASLLYSPEKKLEWEIRYKIALGTAEGLGYLHEGGQRRIIHRDIKASNILLKEDFEPQISDFGLAKWLPEQCTHHIVSGFEGTFGYLPPEYFLHGIVDEKTDVYAYGVLLLELITGRPALDSSQKSLVMWAKPLLINNSIDELVDPRLADAYDSEQMNIVATVSSLCLHQSSVQRPRMNQVVQVLKGREDISTLGKRYQKPILQRTYSEELLDAEEYNSTKHLNDLSRHMEILLEI* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0446 487 MobiDBLite consensus disorder prediction 1 98 - -
Vvi5g0446 487 ProSiteProfiles Protein kinase domain profile. 171 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0446 487 PANTHER OS08G0249100 PROTEIN 46 476 IPR046958 -
Vvi5g0446 487 Pfam Protein kinase domain 172 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0446 487 ProSitePatterns Serine/Threonine protein kinases active-site signature. 290 302 IPR008271 GO:0004672|GO:0006468
Vvi5g0446 487 Gene3D Transferase(Phosphotransferase) domain 1 248 452 - -
Vvi5g0446 487 Gene3D Phosphorylase Kinase; domain 1 149 246 - -
Vvi5g0446 487 SMART serkin_6 171 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0446 487 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 248 450 - -
Vvi5g0446 487 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK2 142 245 - -
Vvi5g0446 487 ProSitePatterns Protein kinases ATP-binding region signature. 177 199 IPR017441 GO:0005524
Vvi5g0446 487 MobiDBLite consensus disorder prediction 73 98 - -
Vvi5g0446 487 SUPERFAMILY Protein kinase-like (PK-like) 156 458 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0446 Vvi-Chr5 3957163 3960217 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0446 141 445 Trihelix Transcription Factor Family AT5G38560 43.533 6.79e-72 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vvi5g0446 Pkinase 2e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0446 - - vvi:100257889 937.176