Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0440 ATGGAGACATCATCACTTCCACCGCCGCTGCAACAATCGCCATCGCCAACGGGAAGGCCGAGGGTTTCAGAGATGGAAGTTCAACATCCGATGACCGAAGACGCTTCGGCTCTATGGGATTGGGGAGACCTTCTCGATTTCTCTGTTGACGATCCATTTACCATCTCCTTTGACTCCGATCACAATCTGGAGGTTTCGCCGTCACCGGAGCCGTTGACTCGCGAGGCGCCGGACGCTCCAGAGAGGGTGCGGAAGCGGGATCCTAGGTTGACCTGTGAGAATTTTTTGGCGGGTCGGATTCCTTGCGCGTGCCCGGAGCTCGATGAGATGATTTTGGAGGAGAGTGCCCCGGGAAAGAAGAGGGTCCGGACTGCGCGACCAGCCGCGGGAAGGGCTCGGTGTCAGGTGACGGGTTGTGAGGCTGATATTAGTGAGCTGAAAGGGTATCATCGACGGCATAGGGTTTGTCTCCGTTGCGCGAATGCTAGTGTCGTTATTCTGGATGGACAGAATAAGCGTTACTGTCAACAGTGTGGGAAGTTTCACATCTTGTCAGATTTTGATGAGGGTAAACGCAGTTGTCGAAGAAAATTAGAGCGTCACAATAATAGACGACGTAGAAAACCTATTGATTCTGGAGGCACGGTTGAAAAGGAAATTCAAGGGGAACTTATATCTGAAGATGCTGCTCATGATGGTGAAGCAGATAAAGATAGTTTGTGCTTGAGCAGCCAGCTAATCGAAAGGGAACCATTGTTGGAGTCTGAAGATGGACATTTTTCCACCCTTTGCTCAGTGCCTGGTTCCCAGAATATTCAGAGCGATGGTATTGTATCTTTTGTGGGTTCTGGAGAAGCCCAAATTGATGGAGGCAAAAATGATTCCAAATATACCCTTTCTTCATCTTACTGTGATAATAAGAGTGCTTACTCATCCCCCTGCCCTACGGGTCGGATTTCGTTCAAGCTCTATGATTGGAATCCTGCTGAATTTCCCAGACGACTTAGGCACCAAATTTTCCAGTGGTTGGCTAGCATGCCTATTGAGTTGGAGGGCTATATCCGTCCTGGGTGTATCATCTTAACAATTTTTATTGCAATGCCAAAGTTTATGTGGGACAAGTTGTTGGAAGATCCTGCTTCATATGTACATGACTTTGTTGCTGCACCTGGAAAGATGCTATCTGGAAGAGGCAATGTACTTGTTTATCTAAACAACATGATTTTTCGTGTTACAGAAGATGGTACTTCTGTGATGAAAGTTGAGGTAAAGATGCAAGCCCCAAAGCTCCACTATGTGCATCCTAACTGTTTTGAGGCTGGTAAGCCCATGGAGTTTGTTGCTTGTGGAAGTAACCTGCTTCGACCTAAATTTAGGTTTCTAGTATCTTTCGCTGGAAAGTATCTGTCTTATGATTACCATGTTGTGTTCCCTCGGGGTAAGATTGAAGGTGACACTGCTGGTAGTTTGGACCATGAATTCTGCAAGATATACATCCCTCATACTGAGCCCAATGCCTTTGGCCCTGCATTTATTGAGGTTGAGAATGACCATGGCTTATCCAACTTCATTCCTATTTTTATTGGAGACAAAGAAATTTGTTCGGAAATGAAGATATTGCAGCATAGATTTGATGCATCTCTCTGTTCCAAAGGATCACAGTTTTTTGCTAAAGATCCATCTGACTCGTGCAAGGTTTCAGTATTGGGACAAACCGCATTTTCTGAATTTATTTTAGATATAGCCTGGATACTCAAGGAGCCTGCATCGGAGAATATTCAGCGAAGTTTAACCTCTTCACATATTCAGAGATTTAATTGTTTACTGAACTTTCTAATACACAATGAGTCGACCACCATCTTGGAGAAAATATTACAATCTCTGAAGATTTTGATAGATAACATGGACTTAAACATTCAGGTTAATGGCGCCACTGATACTGATTTGAGGCTGCTTTATAAGTACATGGATCATGCTAGTAAGATTCTTCATCAGAAACTTCACAGTAGTGGGGGTTTAGTACTGCATTCTGGAAATTCTGTGACAAAAGGGGATCATCCTAGCTGCTTCCACAACAACATGCTCCCTGTTGTCTTTCCCCCTGAGGACACAAAAATAAGCGCAAACGGTGGGTTGGCAGCAATGGCAAGTTCAACTTCTACAGATAGAAGTGAAACTGTCTCACTATTGAACAGAGAGGTTGTTATGAATATGAACTCAATCAAGGAACAGCCAAGGAAATCCTGCAGCCTTATTTTCTCAAAGAAAGCCATGACCTCACGACCTTTTCTTTATATGATTGTTGCCGCTGCCGCTTGTTTTGGGATATGTGCTGTCCTTCTCCACCCTCATGAGGTTGGCAAATTGGCAGTGTCTATCCGCAGGTGTTTGTTTGACAATTCTTAG 2406 0.446 METSSLPPPLQQSPSPTGRPRVSEMEVQHPMTEDASALWDWGDLLDFSVDDPFTISFDSDHNLEVSPSPEPLTREAPDAPERVRKRDPRLTCENFLAGRIPCACPELDEMILEESAPGKKRVRTARPAAGRARCQVTGCEADISELKGYHRRHRVCLRCANASVVILDGQNKRYCQQCGKFHILSDFDEGKRSCRRKLERHNNRRRRKPIDSGGTVEKEIQGELISEDAAHDGEADKDSLCLSSQLIEREPLLESEDGHFSTLCSVPGSQNIQSDGIVSFVGSGEAQIDGGKNDSKYTLSSSYCDNKSAYSSPCPTGRISFKLYDWNPAEFPRRLRHQIFQWLASMPIELEGYIRPGCIILTIFIAMPKFMWDKLLEDPASYVHDFVAAPGKMLSGRGNVLVYLNNMIFRVTEDGTSVMKVEVKMQAPKLHYVHPNCFEAGKPMEFVACGSNLLRPKFRFLVSFAGKYLSYDYHVVFPRGKIEGDTAGSLDHEFCKIYIPHTEPNAFGPAFIEVENDHGLSNFIPIFIGDKEICSEMKILQHRFDASLCSKGSQFFAKDPSDSCKVSVLGQTAFSEFILDIAWILKEPASENIQRSLTSSHIQRFNCLLNFLIHNESTTILEKILQSLKILIDNMDLNIQVNGATDTDLRLLYKYMDHASKILHQKLHSSGGLVLHSGNSVTKGDHPSCFHNNMLPVVFPPEDTKISANGGLAAMASSTSTDRSETVSLLNREVVMNMNSIKEQPRKSCSLIFSKKAMTSRPFLYMIVAAAACFGICAVLLHPHEVGKLAVSIRRCLFDNS* 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0440 801 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 78 625 IPR044817 GO:0003677
Vvi5g0440 801 MobiDBLite consensus disorder prediction 1 31 - -
Vvi5g0440 801 ProSiteProfiles Zinc finger SBP-type profile. 131 208 IPR004333 GO:0003677
Vvi5g0440 801 Pfam SBP domain 134 208 IPR004333 GO:0003677
Vvi5g0440 801 Gene3D - 126 195 IPR036893 GO:0003677|GO:0005634
Vvi5g0440 801 SUPERFAMILY SBT domain 132 212 IPR036893 GO:0003677|GO:0005634
Vvi5g0440 801 MobiDBLite consensus disorder prediction 60 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0440 Vvi-Chr5 3885359 3895638 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0440 24 794 SBP-box Gene Family AT5G18830 50.623 0.0 770
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vvi5g0440 SBP 7.9e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0440 - - vvi:100251222 1614.74