Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0432 ATGGTGGATCCTGTGGTCTCAAGGTCCCTGTCCATACCTGGTCGAAATGTTGTCATTGTAAGATCTGTATCTTTTGCTACTCGACATGAACAGGTTCAGACTGAATCTAGTGATGATCAAATTACTCCCGTTCCTATGCAAAATGAAGACGAAGAGATACCTGAAGAGGAGGCAGTTTGCAGAATCTGTTTGGAAGTTTGTGAAGAAGGAAACACACTCAAGATGGAATGCAGTTGCAAAGGTGCCCTCAGACTTTTACATGAAGACTGTGCGATTAAGTGGTTCACTACAAAAGGAAATAAGACTTGCGATGTATGTAGGCAGGAGGTTCAGAACTTACCTGTAACCTTGCTTCGGGTGCCAACTTCTGCTCAAAGGGATAACAGACAGGCACATAATCAACAGAGTTTAAATTCGCGATCAGTAAGTGTTTGGCAGGACTTTGTGGTTCTTGTCTTGATTAGCACGATATGCTATTTCTTCTTCCTTGAGCAGCTCCTGATTCATGACATGAAGACTCAAGCAATTGTAGTTGCAGCACCATTTTCTTTTACTTTGGGTCTTTTGGCATCTATTTTTGCAATTATCCTAGCAATCAAGGAGTATATATGGACATATGCTGCTCTTGAGTTTGCGCTTGTGGCCATAATCGTCCATCTTTTCTATAGTTTGCTTCATCTGAAGGCGGTTTATGCCATAATGCTTTCTGCAGTTATGGGTTTCGGCATAGCTATGAGCCTCAATTCATTGTACATTCAATTTTTTACTTGGCGGTTTCAGATTACACAGAACTCCAACCCTGTATGA 807 0.4151 MVDPVVSRSLSIPGRNVVIVRSVSFATRHEQVQTESSDDQITPVPMQNEDEEIPEEEAVCRICLEVCEEGNTLKMECSCKGALRLLHEDCAIKWFTTKGNKTCDVCRQEVQNLPVTLLRVPTSAQRDNRQAHNQQSLNSRSVSVWQDFVVLVLISTICYFFFLEQLLIHDMKTQAIVVAAPFSFTLGLLASIFAIILAIKEYIWTYAALEFALVAIIVHLFYSLLHLKAVYAIMLSAVMGFGIAMSLNSLYIQFFTWRFQITQNSNPV* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0432 268 CDD RING_CH-C4HC3_MARCH 60 107 - -
Vvi5g0432 268 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 115 IPR013083 -
Vvi5g0432 268 SUPERFAMILY RING/U-box 56 110 - -
Vvi5g0432 268 Pfam RING-variant domain 60 106 IPR011016 GO:0008270
Vvi5g0432 268 PANTHER OS02G0165000 PROTEIN 6 266 - -
Vvi5g0432 268 SMART ringv_2 59 107 IPR011016 GO:0008270
Vvi5g0432 268 ProSiteProfiles Zinc finger RING-CH-type profile. 52 113 IPR011016 GO:0008270
Vvi5g0432 268 ProSiteProfiles Zinc finger RING-type profile. 60 107 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0432 Vvi-Chr5 3820612 3824475 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0432 48 169 C3H Transcription Factor Family AT2G37950 27.907 2.44e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0432 - - vvi:100259554 525.013