Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0429 ATGGACTGCAATAAAGAAGAGGCTGTCAGGGCCAAGGGGCTTGCTGAAAAGAAGATGCAAAACAAGGATTTTGTGGGGGCTCGGAAGATTGCAATTAAAGCCCAACAACTCTATCCTGATCTGGAAAATATTTCCCAGATGCTCACTGTGTGTGATGTACACTGCTCTGCGGAACACAAATTGATTGGGAATGAGATTGACTGGTATGGTGTCCTTCAAATTGAGCAAACGGCAGATGAGGCATCAATCAAGAAGCAATACCGGAAGCTTGCTCTCCTACTTCACCCAGACAAAAACAAGTTTTCTGGTGCTGAAGCTGCCTTTAAGCTGATTGGGGAAGCACAAAGAGTTCTTTTGGACCGGGAAAAACGGTCCTTGCATGACATGAGACGTAAAGCTTGCATGAAACCTAAAGCAGCACATCAGACCCAACCGCGTGCAAATAAGAATGTGAATTTTGGAAGACAATCTGGGGTTCAAAACAGTTCTATGAACAATGCTGCTACAACATATGCAGGTGTGAATGCCCAACACCAGCGGCCACAACAGCAGGCTTCATCAGGTTCTTCCAATGGCCGCCTGACATTCTGGACTGTATGTCCTTTCTGTGCTGTAAGATACCAGTATTATAGAGAAATCGTCAACCGATCATTGCGTTGTCAAAGCTGTGGCAAGACCTTCATTGCCTATGACATGAATACTCAAAGTACAGCACAAGGAACCAGTTGGAGTCAGCCTGCATTCCCCCAACAGAAGCCAGTCCCTAATCAGGATGCTCATAAAGTGGGTCCACAGAGTACTTTTCAGAAACCTGCTTCCAATGTGGGATTTCAAGGAAAATTTGGTGGTGAGAAGTCAAGAATGGAGTCATTCTCAAAGACTGGATGCACTTCTGAGATTGGTGGTGGGTCTAAAACCAATGAGAAATATGTGAATGTGGATATGAAGGTTGATAAAGGAGGGGGATCTAACGAAGCTAAATCCCCAGGAAAGGTGAACGGTAAGAAAAGAAAGAAGCAGGAAGTGGAATCCAGTGAAAGTTGCGACACTGGAAGCAGCTCTGACACTGAAGAATTAGTTATGGAAGAGGATGATGATCTCCCAGCTAAACAGAATTATGGACGTTATGCAGAGCAGTACCCCCGGCGATCTAATCGGCATAAACAACATGTTTCCTACAGTGAAAATGTAAGTGATGATGACAACTTAATGAGTCCTCGAAAAAGAGCAAAAGGGAACGGATCATCCTCTGCCAATGAAGAGAAGAGCGAGGATGTATCATTGAAAGAAAACATATGCAAAATCAATAAGCAGGCTGGTGCAGCTGCTGATGTAGAAGAAGATAAGAAGGACTCGGGGCAAAAAGGAACTGGCTCTTTTGATGAGAGCTTGCCTAATGGAACCAAAGAGACTAAGAAAGACAATGGAAAGGAAACAGTGACGGATGATGCATGTAAGAGAAGTCCTGAAGCTGATAATGATTTTCCTTCAAGTTCAACCCCCAAAGCTGCAAAAGATCCAGAGTTCTATGAATACCCCGATCCAGATTTTAATGACTTTGACAAGGATAGGAAAGAAGAATGTTTTACAGTTGGGCAGACATGGGCTGTCTATGATACTGTGGATGCAATGCCGAGATTCTATGCTCAGATCAGGAAAGTTTTCTCTACTGGGTTCAAGCTGCGGATAACCTGGTTGGAGCCTGACCCTAGTGATGAGGCTGAAATTGAATGGGTTAGTGAAGATTTGCCATATTCTTGTGGTAATTTCAAACGTGGGAAGTCCGAAAACACTGGAGATCGTCTTATGTTCTCTCATTTAGTTTCTTGGGAAAAGGACCGCAGTAGAGATGCTTACAAGATACATCCAAGAAAAGGAGAGACCTGGGCCCTTTTTAAGAACTGGGATATAAAATGGAGCTCAGACCCAGAGAGTCATAGGAAGTATGAGTTTGAATATGTGGAAGTCTTGTCAGAATATGATGAGAATGTTGGAATATCAGTTGTGTACTTGAGTAAGTTAAAAGGTTTTGCCTGTCTTTTTTGTCGAATACTGAAGCAAGGAATTGATTCAATCTTGATCCCACCAAGTGAACTACTTAGGTTCTCCCACAGGATTCCTTCTTTTAAACTGACTGGTGAGGAAAGGCAAGATGTTCCAAGAGGGTCTCTTGAACTTGACCCTGCGTCTCTGCCTGCCAACGTTGAAGAAATTCCTGTTCCTGAAGAAGATTTGAAGATGGAGGCTAGTAATGCAAATTCTAATGGTTCTGTTTCTAAGTCTACAGAAGAGAATGTGAAGCCCATGACAGGGTCAGAAGGAGGTTCATCTATGTTTCAGGTTGATAATGAGACCCATTTAGACCCGGAGAATGGCAATCCTGATGATATTCTCAAAGACCATAGTAGTGATCCAGCTTCTGTAGTAGCTTCAACTCCAGAAGCTTATGAAATTCCTGAGCCAGACTTCTGCAACTTTGATGCTGAGAAATCCCCAGAAAAGTTTCAAGTTGGTCAGATTTGGGCCTTGTACAGTGATGAGGATGGTTTGCCAAAGTACTATTGTCAGATTAAGAAAATTGATTCTGATCCAGATTTCAAATTGCACGTAACTTGGCTTGAAGCCTGCTCACCTCCAAATGACATGATTCAGTGGCTTGACAAAAAGATGTTGACCACGTGTGGGAGATTTAAGATTAAGAAGGGTAAGCCCCAGACCTATACTAGTGCTGCTTCCTTTTCTCATCAGTTAAGAGCAGAACTTACTGACAAGAAGAATGAATATGCCATCTTTCCTAGGAAAGGTGAGGTTTGGGCATTGTACAAGAACTGGAATGCTGAAATGACATGTTCTGACTTGGAGAACTGTGAATATGACATAGTTGAAGTTCTAGATGAAAATGATTTGTGGATTGAAGTTTTGCTTTTAGAGCGAGTGGAGGGTTACAATGCAGTTTTCAAGTCTCAAGTAGAAGGAAGATTACCTTTCAGTATGAAGATTCCTCGGGTTGAATTGCTTAGGTTCTCTCATCAAATTCCTGCTTTCCATCTGACGGAAGAGAGAGATGGTGCCTTGAAAGGAAACTTAGAGCTTGATCCTGCATCATTGCCAATTCTTTTATTTTGTTCAAACTGA 3135 0.4258 MDCNKEEAVRAKGLAEKKMQNKDFVGARKIAIKAQQLYPDLENISQMLTVCDVHCSAEHKLIGNEIDWYGVLQIEQTADEASIKKQYRKLALLLHPDKNKFSGAEAAFKLIGEAQRVLLDREKRSLHDMRRKACMKPKAAHQTQPRANKNVNFGRQSGVQNSSMNNAATTYAGVNAQHQRPQQQASSGSSNGRLTFWTVCPFCAVRYQYYREIVNRSLRCQSCGKTFIAYDMNTQSTAQGTSWSQPAFPQQKPVPNQDAHKVGPQSTFQKPASNVGFQGKFGGEKSRMESFSKTGCTSEIGGGSKTNEKYVNVDMKVDKGGGSNEAKSPGKVNGKKRKKQEVESSESCDTGSSSDTEELVMEEDDDLPAKQNYGRYAEQYPRRSNRHKQHVSYSENVSDDDNLMSPRKRAKGNGSSSANEEKSEDVSLKENICKINKQAGAAADVEEDKKDSGQKGTGSFDESLPNGTKETKKDNGKETVTDDACKRSPEADNDFPSSSTPKAAKDPEFYEYPDPDFNDFDKDRKEECFTVGQTWAVYDTVDAMPRFYAQIRKVFSTGFKLRITWLEPDPSDEAEIEWVSEDLPYSCGNFKRGKSENTGDRLMFSHLVSWEKDRSRDAYKIHPRKGETWALFKNWDIKWSSDPESHRKYEFEYVEVLSEYDENVGISVVYLSKLKGFACLFCRILKQGIDSILIPPSELLRFSHRIPSFKLTGEERQDVPRGSLELDPASLPANVEEIPVPEEDLKMEASNANSNGSVSKSTEENVKPMTGSEGGSSMFQVDNETHLDPENGNPDDILKDHSSDPASVVASTPEAYEIPEPDFCNFDAEKSPEKFQVGQIWALYSDEDGLPKYYCQIKKIDSDPDFKLHVTWLEACSPPNDMIQWLDKKMLTTCGRFKIKKGKPQTYTSAASFSHQLRAELTDKKNEYAIFPRKGEVWALYKNWNAEMTCSDLENCEYDIVEVLDENDLWIEVLLLERVEGYNAVFKSQVEGRLPFSMKIPRVELLRFSHQIPAFHLTEERDGALKGNLELDPASLPILLFCSN* 1045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0429 1044 MobiDBLite consensus disorder prediction 441 456 - -
Vvi5g0429 1044 MobiDBLite consensus disorder prediction 380 407 - -
Vvi5g0429 1044 MobiDBLite consensus disorder prediction 238 252 - -
Vvi5g0429 1044 MobiDBLite consensus disorder prediction 713 734 - -
Vvi5g0429 1044 Pfam Domain of unknown function (DUF3444) 508 715 IPR024593 -
Vvi5g0429 1044 Pfam Domain of unknown function (DUF3444) 814 1020 IPR024593 -
Vvi5g0429 1044 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
Vvi5g0429 1044 Pfam DnaJ domain 67 128 IPR001623 -
Vvi5g0429 1044 MobiDBLite consensus disorder prediction 749 812 - -
Vvi5g0429 1044 MobiDBLite consensus disorder prediction 749 787 - -
Vvi5g0429 1044 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN-RELATED 1 743 - -
Vvi5g0429 1044 MobiDBLite consensus disorder prediction 466 490 - -
Vvi5g0429 1044 CDD DnaJ 67 120 IPR001623 -
Vvi5g0429 1044 MobiDBLite consensus disorder prediction 290 305 - -
Vvi5g0429 1044 PRINTS DnaJ domain signature 87 102 IPR001623 -
Vvi5g0429 1044 PRINTS DnaJ domain signature 69 87 IPR001623 -
Vvi5g0429 1044 PRINTS DnaJ domain signature 103 123 IPR001623 -
Vvi5g0429 1044 MobiDBLite consensus disorder prediction 238 514 - -
Vvi5g0429 1044 Gene3D DnaJ domain 64 183 IPR036869 -
Vvi5g0429 1044 MobiDBLite consensus disorder prediction 260 274 - -
Vvi5g0429 1044 SUPERFAMILY Chaperone J-domain 61 132 IPR036869 -
Vvi5g0429 1044 SMART dnaj_3 66 123 IPR001623 -
Vvi5g0429 1044 MobiDBLite consensus disorder prediction 788 802 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0429 Vvi-Chr5 3805666 3808800 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0429 4 229 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 33.766 3.09e-29 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0429 - - vvi:100244334 2133.61