Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0425 ATGACCTTATTACAGCAGGATAGTCAGCTTCCTGAAGATTCAGTACATGATCTTGCCCGTGACCTTGTCAGAGCTTTGCAGTTTTTACATTCTAAGGGAATCATATACTGTGACTTAAAACCATCAAATATCCTATTGGATGAGAATGGGTGCACAAAGCTATGTGATTTTGGATTAGCAAGAAAATTGAGTGATATATCAAAAACACCTTCTTCCATGTTGCCACAAGCAAAACGTGGAACACCATGTTATATGGCTCCAGAGCTGTTTCAGGATGGAGGCGTGCATTCTTATGCTTCCGATTTCTGGGCCCTTGGTTGTGTACTATATGAGTGCTATGCTGGAAGACCCCCCTTTGTGGGAAGAGAATTTACTCAGTTAGTAAAATCCATCCTCTCAGATCCCACTCCAACCCTGCCTGGTACGCCGAGCCGTCCCTTTGTTAATCTAATCAATTCTCTCCTGGTAAAAGATCCAGCTGAAAGAATACAGTGGCCTGAACTTTGTGGGCATGCTTTCTGGAGAACAAAATTCACATCAGTGCCTCTACCTCCTCAGCCTGCTTTTGATAATTTGATAGACCTTTATTCTAAACTGTGTCTATCCGAACGGAATGGTGACAAGCCTCTCCAAAATAAGACCCCTCCTAAATATCGTGACAGAGATTCAAAAGGGACTCCCAAACAAGATGAGAATTCTATTTTGGGATTAAAAGGTTATGAAACACCAGTTAAAGGTATAACAGGTGGACGCAGAGCTCAAACAAAGGCTTCTGGAAGAGTAGCTGATGAGAAGCAGAAAGATCCTTCAAGTGCTACCGGGGGTGTGAATCTTTTAAGGCTCTCAAGAATTGCAAAATCAAACTTACAGAGAGAGAATGAGAAGGAAAACTACCGAAGGCCCTTGCCAAATAACTCTGAAAATGATTCTGAGGTTAAAATTGAGAACACAGATATGGAACTTGATTTTAATGAAAACACTGAAGATGAGCCACATGATGAACCTGATGGGTCTGATACTTCAAACTTTACTCCTGAAGACAAATTGTCAAGTCAAACTCAGCATCAGGGGAAAGTGGAAGAGATGGAAGATAACACAAACCAACTAGATACTGCACATGTTGTCAGCATACCTGTCTCAGATGACTCGAGAACATTTGATCATGAATCAGACCATGTTGAAGTGGCTGCTACCCCGCCCAGTGTTAGTCCTCAGGTTAGAATCCAGAGGGTTAAAGAAGGTTCAGGTTCTGCTGTTGATTTTGATTCTTCAAAATCATCTGGTAACATTTCGCACGTGCTTTGGCATCCTTCCGATCTCTCAGTTAGACCCGTAATGCCCAGTAGAAAAGCTGATAAATTGCCAGAGACACTTCCTTCTCTTCCCTTTGATGCACTGGCAGCATCTGATTTCATCAAGATGTCCAAGGAGCAGCTTGATTCACTCAACAATAGGATTATAACCATCTTTAATGGTAACACTACCATTGCAGAGAAGCAGAATGTGATCAAATACCTTGAAATGTTGAGCAATAATGCTGATGCTGCGAATATCTTAACCAATGGGCCAATCATGATGGTTATTGTCAAAATGCTCCGACAGTCCAAGGCATCTGCTTTGCGTGTTCAGCTTGCTTCACTGATTGGTTTGTTAATTCGGCATTCTACTTTCATTGATGATGATTTGGCAAGTTCTGGAATTTTAGGTTCTCTTACTGACGGTCTTAGAGATAGGCAGGAAAAAGTAAGGAGGTTTTCTATGGCTGCATTGGGTGAGTTGCTATTTTATATATCCACTCAGAATGAACATGCTAAAGATAACAATCCACCAGAATCCCCATCAAAGGATAGCCGGTCCTCATCTGGTTGGCAGGTTTCAAATGCGTTAATATCATTGGTGTCATCAATTTTACGGAAAGGAGAGGATGATGTAACTCAACAGTATGCACTGAGAACAATAGAAAACATATGCAGTCAGGGAGGGAACTGGGCAGCTCGTTTCACCAGCCAGGATGTAATTAATAACCTGTGCTATATATTTAGGGCTGCAGGGAAACAAGAGAGCATGAGACTCACAGCAGGATCGTGTCTAGTACGACTGGTTCGTTTTCATCCTCCTAGTATTCAATCAGTCATAGACAAGCTTTCATTCAGGGACACTGTAACTGCCCTTGTCAAAGGCAGTCCACGTGAGCAGCAAATCAGCTTAAACCTTCTAAACATGGCCATGCTTGGAAGCCATATGTTCACAAACATTGGCCGGCACCTTCTGCCCTTGGTGGAGGATAAGAATCTGGTTCCTAGTCTCGTGTCTCTTATCGAGCAGGGAAGTGAGGTTTTGAGAGGAAAGACACTTGTTTTTGTAGCCCTCCTTTGTAAGAATGGTAAGAGATGGCTGCCTCATTTTTTTTGCAATGCTAGGTTCCTCTCAGCAGTGGACAGGCTGGTAAAAGAGAAGGATAGCTATGTCCAGCAGTGTTTAGATGCATTTTTGCATGTTGTGTCATCTACTATTCCAGGTTTGCTGGAGACTATAACTGGAGATATTCAGCAAATGATGGGAGGAAGGCGGCATGGCCAAATTGCTGGCCTTACCAATCGGGCTGCCCCAAAAATTAAAGTTCATTTGTTTCCTGTTGTTCTTCATCTTCTTGGGAGCTCATCATTTAAGCACAGGGTTGTGAATCATCAAGTGCTGCAGCAATTGGCAAATCTAATCAAACTTGCAGAGTCACCATTTCAGGGTAGGGATGACTTCCAAATAACTCTTCTGCGAGTGCTTGAGTCTATAACAGAGGAGCCCTCTGTAATTCTTGAAAGCGCTAATGTTTTCATTGGTGAAATTCTCCCAAGTTTGGCTGTTCTGTACAGGGGGAACAAAGATGGAGATGCCAGATTTTTGTGCCTGAAAATTCTATTTGATGCAATGGTCATATACTTAAATGAACCATCAGAAGTTGAGCAAAGATCAGAGGACTTGAAGTCCATATCCAATACTCACTTCCTGCCCCTTTACCCCACTCTCATTGAGGATGAAGATCCCATTCCCATGTATGCGCAGAAGCTTCTTGTGATGTTTATCGAGTTTAATTACATTAGAATTCCAGACATTCTACATATGGAGACAGTCTCCCAGTGCTTTGAATTTTTGCTTGGTGATCTTTCAAGTGCAAATGTAAACAGCGTTAAGCTGTGTCTGGCTCTGGCATCTGCTCCTGAAATGGAAACCAAGTTGCTCTCTCAATTAAAAGTAGTCAGGAAGATTGGAAACCTTCTTGAGTTTGTCAATGCAAAAGATATGGAAGATTTTCTTGAACCTACTCTTGGCCTGTGTAGGGCTTTTCTTCTACGTTCAGTAGGCAGTAGAAAAGGCTTCATCTATTCAAAAGAACCAACTCTCATATGTGATGGTCCTACTGAAGTGAGAGGTGCAGTTGATCAGCAGCAATACATAAGGGATATAATGGACTTTGGTAGCAACGTTAGTGTTTTTCTGGAATTAAGTGGCTCAGATGAAGCCAATGTTGCAGATATAGCTTCTGAATGTGTGGTTTTGTTGCTCAAGGCTGCTCCCAGGGAAGCCACTACTGGTTTTCTAACTAATCTCTCAAAGGTTAGTGCACTTCTTGAGTCCTGGCGAAGGGCTGTCTCTCACTTACTGGTGCTGCGGATGCTGCATGCTCTTGGGTACTCCTGTAGGCAATATTTGTCACATGCAATGATATTATCAATATCTATCCCAGAGATTTCAAGACTTGAAACCATTGTTTCTGAGCTTAAAAACTCAAGCATCCCAGGCGTAGCTGATGCTGCTTTGCTTGTGGCCAAGGAGTTGCAGCGGCTTCCCCGGTGCAATTGA 3858 0.4256 MTLLQQDSQLPEDSVHDLARDLVRALQFLHSKGIIYCDLKPSNILLDENGCTKLCDFGLARKLSDISKTPSSMLPQAKRGTPCYMAPELFQDGGVHSYASDFWALGCVLYECYAGRPPFVGREFTQLVKSILSDPTPTLPGTPSRPFVNLINSLLVKDPAERIQWPELCGHAFWRTKFTSVPLPPQPAFDNLIDLYSKLCLSERNGDKPLQNKTPPKYRDRDSKGTPKQDENSILGLKGYETPVKGITGGRRAQTKASGRVADEKQKDPSSATGGVNLLRLSRIAKSNLQRENEKENYRRPLPNNSENDSEVKIENTDMELDFNENTEDEPHDEPDGSDTSNFTPEDKLSSQTQHQGKVEEMEDNTNQLDTAHVVSIPVSDDSRTFDHESDHVEVAATPPSVSPQVRIQRVKEGSGSAVDFDSSKSSGNISHVLWHPSDLSVRPVMPSRKADKLPETLPSLPFDALAASDFIKMSKEQLDSLNNRIITIFNGNTTIAEKQNVIKYLEMLSNNADAANILTNGPIMMVIVKMLRQSKASALRVQLASLIGLLIRHSTFIDDDLASSGILGSLTDGLRDRQEKVRRFSMAALGELLFYISTQNEHAKDNNPPESPSKDSRSSSGWQVSNALISLVSSILRKGEDDVTQQYALRTIENICSQGGNWAARFTSQDVINNLCYIFRAAGKQESMRLTAGSCLVRLVRFHPPSIQSVIDKLSFRDTVTALVKGSPREQQISLNLLNMAMLGSHMFTNIGRHLLPLVEDKNLVPSLVSLIEQGSEVLRGKTLVFVALLCKNGKRWLPHFFCNARFLSAVDRLVKEKDSYVQQCLDAFLHVVSSTIPGLLETITGDIQQMMGGRRHGQIAGLTNRAAPKIKVHLFPVVLHLLGSSSFKHRVVNHQVLQQLANLIKLAESPFQGRDDFQITLLRVLESITEEPSVILESANVFIGEILPSLAVLYRGNKDGDARFLCLKILFDAMVIYLNEPSEVEQRSEDLKSISNTHFLPLYPTLIEDEDPIPMYAQKLLVMFIEFNYIRIPDILHMETVSQCFEFLLGDLSSANVNSVKLCLALASAPEMETKLLSQLKVVRKIGNLLEFVNAKDMEDFLEPTLGLCRAFLLRSVGSRKGFIYSKEPTLICDGPTEVRGAVDQQQYIRDIMDFGSNVSVFLELSGSDEANVADIASECVVLLLKAAPREATTGFLTNLSKVSALLESWRRAVSHLLVLRMLHALGYSCRQYLSHAMILSISIPEISRLETIVSELKNSSIPGVADAALLVAKELQRLPRCN* 1286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0425 1285 ProSiteProfiles Protein kinase domain profile. 1 174 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0425 1285 MobiDBLite consensus disorder prediction 602 622 - -
Vvi5g0425 1285 MobiDBLite consensus disorder prediction 321 335 - -
Vvi5g0425 1285 MobiDBLite consensus disorder prediction 353 367 - -
Vvi5g0425 1285 SMART serkin_6 1 174 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0425 1285 Pfam Protein kinase domain 2 173 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0425 1285 PANTHER SERINE/THREONINE-KINASE ULK4-LIKE PROTEIN-RELATED 1 1282 IPR044591 GO:0000911|GO:0000914|GO:0008017
Vvi5g0425 1285 MobiDBLite consensus disorder prediction 204 369 - -
Vvi5g0425 1285 SUPERFAMILY ARM repeat 497 828 IPR016024 -
Vvi5g0425 1285 MobiDBLite consensus disorder prediction 213 228 - -
Vvi5g0425 1285 Gene3D Transferase(Phosphotransferase) domain 1 1 181 - -
Vvi5g0425 1285 Gene3D - 493 974 IPR011989 -
Vvi5g0425 1285 MobiDBLite consensus disorder prediction 287 302 - -
Vvi5g0425 1285 ProSitePatterns Serine/Threonine protein kinases active-site signature. 34 46 IPR008271 GO:0004672|GO:0006468
Vvi5g0425 1285 SUPERFAMILY Protein kinase-like (PK-like) 3 175 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0425 Vvi-Chr5 3710369 3716168 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0425 10 173 MAP Kinase Kinase Kinase AT3G50310 35.503 5.09e-24 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK ULK_ULK4 Vvi5g0425 Pkinase 1.1e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0425 K17545 - vvi:100259712 2527.28