Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0422 ATGGGGTTTGAATTAGGCTCTGTTGTGATGAAATTGGGAATGGTCTCTACATCTGATCACAGTTCTGTGGTCTCCATGAATCTATTTGTGGCGCTTCTCTGCGCGTGTATAGTGGTGGGTCACTTGTTAGAGGAGTATCGATGGATGAACGAGTCAATCACAGCCCTTGCGCTTGGTCTGTGCACAGGAATTATTATTCTACTAACCACCCGAGGAAAAAGCTCACATATTTTAGTATTCAGTGAAGATCTTTTCTTTATTTATCTTCTTCCACCTATCATTTTTAATGCTGGCTTCCAGGTGAAAAAGAAGCAGTTTTTTCGTAACTTCATGACCATCATGCTGTTTGGAGCTATTGGAACTCTGATATCTTTTGGCATCATATCATTAGGTGCTATACACTTTTTCAAGAAGATGAAAATTGGCTCCCTCGATATAGGGGATTACCTTGCACTTGGAGCAATATTTTCTGCAACAGATTCCGTTTGCACATTGCAGGTGCTTAATCAGGATGAGACACCCTTACTCTACAGTCTGGTTTTTGGAGAAGGTGTTGTGAATGATGCCACATCTGTGGTGCTTTTCAATGCAATCCAGAGCTTTGACCTCTCTCACATCGATTCAAGCATTGCCTTGCAGTTCATTGGCAACTTTTTGTATTTATTTATCACAAGTACCATGCTGGGAGTTTTTGCTGGACTGCTTAGCGCATATATTATTAAAAAGCTCTATTTTGGAAGGCATTCGACTGATCGGGAGGTTGCAATCATGATACTCATGGCTTACCTTTCGTATATGCTGGCTGAACTGTTCTATTTAAGTGCCATTCTCACTGTGTTCTTTTGCGGGATTGTCATGTCTCACTACACATGGCATAATGTGACTGAAAGTTCAAGAGTGACTACCAAGCATGCTTTTGCGACATTGTCATTTGTTGCTGAAATTTTTATCTTTCTATATGTTGGCATGGATGCCTTGGACATTGAGAAATGGAGATTTGTAAGTGATAGCCCTGGAAAATCAATTGGTGTGAGCTCGATACTGTTGGGACTGGTTCTGGTTGGAAGGGCAGCATTTGTTTTCCCTTTATCCTTTCTGTCCAACTTGACTAAGAAATCATCAAGCGAGAAAATTCACATAAAACAGCAAGTCACAATTTGGTGGGCTGGTCTTATGCGTGGTGCTGTTTCTATGGCACTAGCTTATAATCAGTTTACTAGGGCAGGCCATACTCAATTGCGCGGGAATGCAATTATGATCACCAGTACTATCTCAGTTGTTCTTTTCAGTACAGTGGTGTTTGGGTTGATGACAAAGCCTTTAGTGAGGTTATTGCTTCCTTCTCCAAAACCCTTCACCAGCATGATTTCTTCTGAACCATCCAGTCCTAAATACCTCGTTGTCCCACTTATCGGTAATGGGGAGGAGACAGAAACTGACCAGGCCAGCCAAAATGTACCCCGCCCCACCAGCTTACGGATGCTCCTAAGCACTCCCAGTCACACTGTTCACCATTACTGGCGAAAATTTGATGATTCCTTCATGAGACCTGTTTTTGGTGGACGGGGATTTACACCCTTCATCCCTGGATCACCCACTGAACCAAACCTTGGTCAATGGCGATGA 1626 0.4262 MGFELGSVVMKLGMVSTSDHSSVVSMNLFVALLCACIVVGHLLEEYRWMNESITALALGLCTGIIILLTTRGKSSHILVFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAIGTLISFGIISLGAIHFFKKMKIGSLDIGDYLALGAIFSATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSFDLSHIDSSIALQFIGNFLYLFITSTMLGVFAGLLSAYIIKKLYFGRHSTDREVAIMILMAYLSYMLAELFYLSAILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRFVSDSPGKSIGVSSILLGLVLVGRAAFVFPLSFLSNLTKKSSSEKIHIKQQVTIWWAGLMRGAVSMALAYNQFTRAGHTQLRGNAIMITSTISVVLFSTVVFGLMTKPLVRLLLPSPKPFTSMISSEPSSPKYLVVPLIGNGEETETDQASQNVPRPTSLRMLLSTPSHTVHHYWRKFDDSFMRPVFGGRGFTPFIPGSPTEPNLGQWR* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0422 541 PANTHER SODIUM/HYDROGEN EXCHANGER 17 519 IPR018422 GO:0006812|GO:0015385|GO:0016020|GO:1902600
Vvi5g0422 541 Gene3D - 146 197 - -
Vvi5g0422 541 Pfam Sodium/hydrogen exchanger family 31 443 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Vvi5g0422 541 PRINTS Na+/H+ exchanger signature 153 163 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vvi5g0422 541 PRINTS Na+/H+ exchanger signature 113 121 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vvi5g0422 541 PRINTS Na+/H+ exchanger signature 84 95 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vvi5g0422 541 PRINTS Na+/H+ exchanger signature 98 112 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0422 Vvi-Chr5 3677507 3683746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0422 6 534 Antiporters AT3G05030 77.154 0.0 850
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0422 - - vvi:100232960 1013.45