Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0419 ATGAGGGGTAGGTGGAATCGTGTGGTTCAAGACGAGTGGGTTGATGGGTTGGAGCAGAGCTGTTGGTCTCAGATGCCTGAGGAGCTGCTCAGAGAGGTGCTTATCAGAATTGAGGCGTCTGACACCACCTGGCCTTCCCGGAAAAATGTGGTCGCCTGCGCCGGAGTCTGCAAGAGCTGGCGCCGTATCACTCAGGAACTCGTCAAGACGCCGGAAGTCTCCGCCTCGTTGACCTTTCCGATTTCGGTCAAGCAGCCTGGTCCAAGAGAATCTCTACTCAAGTGTTTTATAAAACGGAATCGGTCTGCTCAGACGTATTATCTTTACCTCAGTTTAACTAATGCACTAACTGAAGATGGAAAGTTCCTCTTGGCTGCGCGTAAGTACAGACGTACCACCTGCACAGATTATATCATTTCTCTGTATGCTGATGACATGTCAAAGGGGAGCAGCACCTATATTGGAAAATTGAGATCAAATTTTCTAGGAACCAAGTTCACAGTCTATGATGGGCAGCCACCTCATTCTGGAGCCAAGATTATGCGAAATCGCTCCACTAGGCTGGTGGGTTTGAAACAAGTCTCACCCAGAGTCCCTGCTGGAAGCTATCCAGTAGCTCACATCTCATATGAAGTGAATGTGCTGGGTTCTAGGGGTCCAAGGAGAATGCAGTGTAGCATGGATTCCATCCCTGCCTCAGCTATTGAACCAGGGGGAGTGACCCCCACACAGACAGAGATTCGACTCAGCAACCCAGATGTCTTTCCATCCTTCTCATTTTTCCGCTCGAAATCACACAGTGTGGAAAATTCTTTATCAGAACCATTAGCCGATAAAAAGGATGGAGCGCTGGTGTTGAAGAACAAGGCTCCCAGGTGGCACGAGCAGCTCCAGTGCTGGTGTTTGAACTTCCATGGACGGGTGACAGTTGCTTCAGTGAAAAACTTTCAGCTGGTGGCTTCTCCAGAGGATGGACCTGCAGGCCAGCAACATGAGAAGATCATCCTCCAGTTCGGAAAAGTGGGGAAGGATCTATTTACCATGGATTACCGGTATCCAATCTCTGCTTTCCAGGCATTTGCAATCTGCCTCAGCAGCTTTGACACCAAAATTGCTTGTGAATGA 1125 0.4916 MRGRWNRVVQDEWVDGLEQSCWSQMPEELLREVLIRIEASDTTWPSRKNVVACAGVCKSWRRITQELVKTPEVSASLTFPISVKQPGPRESLLKCFIKRNRSAQTYYLYLSLTNALTEDGKFLLAARKYRRTTCTDYIISLYADDMSKGSSTYIGKLRSNFLGTKFTVYDGQPPHSGAKIMRNRSTRLVGLKQVSPRVPAGSYPVAHISYEVNVLGSRGPRRMQCSMDSIPASAIEPGGVTPTQTEIRLSNPDVFPSFSFFRSKSHSVENSLSEPLADKKDGALVLKNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPEDGPAGQQHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0419 374 Gene3D Tubby Protein; Chain A 79 374 IPR025659 -
Vvi5g0419 374 CDD F-box_AtTLP-like 22 66 - -
Vvi5g0419 374 ProSitePatterns Tub family signature 1. 304 317 IPR018066 -
Vvi5g0419 374 Gene3D - 15 70 - -
Vvi5g0419 374 PRINTS Tubby superfamily signature 304 320 IPR000007 -
Vvi5g0419 374 PRINTS Tubby superfamily signature 202 229 IPR000007 -
Vvi5g0419 374 PRINTS Tubby superfamily signature 286 303 IPR000007 -
Vvi5g0419 374 PRINTS Tubby superfamily signature 352 374 IPR000007 -
Vvi5g0419 374 PRINTS Tubby superfamily signature 137 153 IPR000007 -
Vvi5g0419 374 PRINTS Tubby superfamily signature 331 350 IPR000007 -
Vvi5g0419 374 PRINTS Tubby superfamily signature 153 177 IPR000007 -
Vvi5g0419 374 PANTHER TUBBY-RELATED 18 372 - -
Vvi5g0419 374 Pfam Tub family 83 369 IPR000007 -
Vvi5g0419 374 SUPERFAMILY F-box domain 10 65 IPR036047 GO:0005515
Vvi5g0419 374 FunFam Tubby-like F-box protein 79 374 - -
Vvi5g0419 374 Pfam F-box domain 22 67 IPR001810 GO:0005515
Vvi5g0419 374 ProSitePatterns Tub family signature 2. 359 374 IPR018066 -
Vvi5g0419 374 SUPERFAMILY Tubby C-terminal domain-like 71 374 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0419 Vvi-Chr5 3627462 3629970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0419 2 374 TUB Transcription Factor Family AT2G47900 72.751 0.0 552
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vvi5g0419 Tub 9.4e-111 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0419 K19600 - vvi:100258055 757.673