Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0415 ATGGGGTGCGTGTTTGGAAGAGAGGTTTCGGCCAAGAGAGTGGTGGAGAGGAGGGAAGACAGGGATGTGGCAGCGGCGGAGGCAGCAGCAGCGACGGTAGCAGTGGTTAGGGTTGAGAAGGAGGAGGTGAGGAACGGCGGTGATCGCAAGGAGGAGGAGAAGGAGGGAAGTGTGCGTTCCAGGAGGCGATCGGGGAGGCCGAATCCTAGGTTGAGCAATCCTCCAAAGAATGTTCACGGCGAGCAGGTGGCTGCCGGGTGGCCGTCTTGGCTCTCAGCGGCCGCGGGCGAGGCTATCAATGGCTGGACGCCTCGCCGGGCTGATACGTTTGAGAAGCTTGATAAGATTGGGCAAGGCACATATAGCAACGTATACAAAGCTAGGGATACTTTGACAGGGAAAATTGTGGCATTGAAGAAGGTAAGATTCGACAATTTGGAGCCAGAGAGTGTAAAGTTCATGGCTAGAGAGATTCATATTCTAAGACGGTTGGATCACCCAAATGTGGTAAAATTGGAAGGTTTAGTGACTTCAAGGATGTCCTGTAGTCTATACCTTGTATTTGAGTATATGGAGCATGATTTGGCTGGACTTGCTGCAAGCCCAGGGATCAAGTTCACAGAACCTCAGGTCAAATGTTACATGCATCAATTATTATCAGGGCTAGAACACTGTCATAATCGCAATGTGCTGCACCGTGATATTAAGGGGTCAAATCTTCTTCTTGACAATGGAGGAGTTCTCAAGATTGCTGATTTTGGTCTGGCTTCTACTTTTGATCCTAATCATAAGCAGCCCATGACTAGTAGAGTGGTTACTCTATGGTATCGGCCACCGGAACTGCTTCTTGGGGCCACCGAATATGGTGTAGGTGTGGACCTCTGGAGTGCTGGCTGCATTCTAGCTGAGTTATTGGCCGGGAAGCCTATCATGCCTGGTCGCACCGAGGTGGAGCAGCTACACAAGATATTTAAGCTATGTGGCTCTCCTTCTGAAGAATACTGGAAAAAATCAAAGTTGCCGCATGCAACCATATTTAAGCCTCAACAATCATACAAGCGATGCATAGCAGAGACATTTAAGGATTTTCCAGCATCATCATTGCCCCTAATTGAGACACTTCTTGCAATTGATCCAGCTGAACGTCAAACTGCCACTGCTGCATTGAGGAGTGAATTCTTCACAACCAAACCTTATGCTTGTGAGCCTTCCAGCCTTCCAAAATATCCTCCCAGCAAGGAGATGGATGCTAAATTACGGGATGAAGAAGCCAGAAGATTGAGAGCTGCTGGCAAAGCTAATGTAGATGGAGTGAAGAAAACTCGTACACGTGATCGAGCTGTAAGGGCAATGCCTGCTCCAGAAGCCAATGCTGAGCTGCAAGCCAATCTTGATAGGCGACGTCTAATAACTCATGCAAATGCCAAGAGCAAGAGTGAAAAGTTTCCTCCCCCACACCAGGATGGAACCCTTGGCTACCCATTGGGTTCTTCACACCACCTTGATCCAGTCTTTGATCCTCCTGATGTCCCATTCAGTTCCTCCAATTTCACATATTCAAAAGCACCCATCCAAACGTGGTCAGGCCCATTGGTTGATCCTGCTGCTGTAGGTGCTCCAAGGAGAAAAAAATATATGGCAGGTGATGGACATGCACAGTCAAAGCAACCAAAGGATTCTCATAGAGATAAGAATTCTGCTCGGGTCAAAGAGAAAGAAGGCATGTAA 1728 0.4826 MGCVFGREVSAKRVVERREDRDVAAAEAAAATVAVVRVEKEEVRNGGDRKEEEKEGSVRSRRRSGRPNPRLSNPPKNVHGEQVAAGWPSWLSAAAGEAINGWTPRRADTFEKLDKIGQGTYSNVYKARDTLTGKIVALKKVRFDNLEPESVKFMAREIHILRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAASPGIKFTEPQVKCYMHQLLSGLEHCHNRNVLHRDIKGSNLLLDNGGVLKIADFGLASTFDPNHKQPMTSRVVTLWYRPPELLLGATEYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQQSYKRCIAETFKDFPASSLPLIETLLAIDPAERQTATAALRSEFFTTKPYACEPSSLPKYPPSKEMDAKLRDEEARRLRAAGKANVDGVKKTRTRDRAVRAMPAPEANAELQANLDRRRLITHANAKSKSEKFPPPHQDGTLGYPLGSSHHLDPVFDPPDVPFSSSNFTYSKAPIQTWSGPLVDPAAVGAPRRKKYMAGDGHAQSKQPKDSHRDKNSARVKEKEGM* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0415 575 MobiDBLite consensus disorder prediction 39 81 - -
Vvi5g0415 575 SUPERFAMILY Protein kinase-like (PK-like) 103 399 IPR011009 -
Vvi5g0415 575 SMART serkin_6 110 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0415 575 Gene3D Phosphorylase Kinase; domain 1 97 192 - -
Vvi5g0415 575 Pfam Protein kinase domain 110 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0415 575 FunFam probable serine/threonine-protein kinase At1g54610 193 434 - -
Vvi5g0415 575 PANTHER CELL DIVISION PROTEIN KINASE 108 398 - -
Vvi5g0415 575 MobiDBLite consensus disorder prediction 474 507 - -
Vvi5g0415 575 MobiDBLite consensus disorder prediction 544 575 - -
Vvi5g0415 575 FunFam probable serine/threonine-protein kinase At1g54610 97 192 - -
Vvi5g0415 575 MobiDBLite consensus disorder prediction 39 62 - -
Vvi5g0415 575 MobiDBLite consensus disorder prediction 523 575 - -
Vvi5g0415 575 Gene3D Transferase(Phosphotransferase) domain 1 193 433 - -
Vvi5g0415 575 ProSitePatterns Protein kinases ATP-binding region signature. 116 139 IPR017441 GO:0005524
Vvi5g0415 575 CDD STKc_CDK9_like 110 394 - -
Vvi5g0415 575 ProSiteProfiles Protein kinase domain profile. 110 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0415 575 ProSitePatterns Serine/Threonine protein kinases active-site signature. 230 242 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0415 Vvi-Chr5 3595247 3606003 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0415 102 432 Core Cell Cycle Gene Families AT5G10270 52.161 9.06e-121 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vvi5g0415 Pkinase 6e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0415 K08819 - vvi:100240938 1055.82