Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0407 ATGAAGAAAGAGGGAGAAGAGGATGATAGGGACTTGAGTAAACTGATTCTGGCTGACACTGCCTCTGCAATTCCACCATTATCGCAACAGCCACCTCCCATGGCTGAAGGGAGAGCGGCCTTCACCTCCACCTCCAGAAAACGAACCAGAACTGAAGCTGGCCAGGAAACAGAGAGAGGGAGGAGGGAGAAGATGAGCGACATGTACGCGCTTCTCCAAACCATGGTTCCCACTCTCTTCCCTAAGATCATTTCTGAAACGGCCGAGTACATTAAAGAGCTTGAAAGGAGGAGAGATAGGTTGGAGGAGATGAAGAAGTCCATAGGAGCAGTGGCTGCCACACCCATATTGGTTTCTCAGTGCAGCAACCCAGATTCTTCCCTGCGGGTCACTGTCTCCGGCAACGTCGCCTTCTTCGGGATACAATCGGTGCGAGCTCGACGGGGACTGGCCACTCAGATAATCATGGTGTTCGAGAAACATGAGGCCCAGGTCTTCGCGGCAAATGTAGCAGTAAACCATGGCTTGTTGATGGTAACTGTCACGGCATTTGTGGGCAATAATGGAGACGGCGTTATTGACAAGATCATCAGAGACATTCGGAATTTGTAG 612 0.5098 MKKEGEEDDRDLSKLILADTASAIPPLSQQPPPMAEGRAAFTSTSRKRTRTEAGQETERGRREKMSDMYALLQTMVPTLFPKIISETAEYIKELERRRDRLEEMKKSIGAVAATPILVSQCSNPDSSLRVTVSGNVAFFGIQSVRARRGLATQIIMVFEKHEAQVFAANVAVNHGLLMVTVTAFVGNNGDGVIDKIIRDIRNL* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0407 203 CDD bHLH_AtbHLH_like 57 102 IPR045239 -
Vvi5g0407 203 MobiDBLite consensus disorder prediction 1 15 - -
Vvi5g0407 203 MobiDBLite consensus disorder prediction 1 63 - -
Vvi5g0407 203 Coils Coil 84 111 - -
Vvi5g0407 203 Gene3D - 41 113 IPR036638 GO:0046983
Vvi5g0407 203 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 56 183 IPR044278 GO:0003700|GO:0006355|GO:0009960
Vvi5g0407 203 MobiDBLite consensus disorder prediction 43 63 - -
Vvi5g0407 203 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 46 108 IPR036638 GO:0046983
Vvi5g0407 203 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 49 114 IPR011598 GO:0046983
Vvi5g0407 203 SMART finulus 55 100 IPR011598 GO:0046983
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi5g0407 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0407 - - vvi:104879239 379.022