Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0405 ATGGAAGGCTCTGCTGATGAACGTCTTGATTTTGGGAAGATGGGTTTTGGGTGCAAGCATTACAGAAGAAGATGCAGAATTCGTGCTCCCTGCTGCAACGAGATCTTTCCTTGCCGCCATTGTCACAACGAGGCCACGAGCATGTTGAGAAACCCCTTTGATCGGCACGAACTAGTTCGGCATGATGTTAAACAAGTGATATGTGCAGTTTGTGACACAGAGCAGCCTGTTGCTCAAGTTTGTACAAATTGTGGCGTCAATATGGGGGAATATTTCTGTGAAGTGTGCAAATTCTATGATGATGATACTACGAAAGGGCAGTTTCACTGTGATGACTGTGGGATCTGTAGAGTTGGAGGTCGTGATAAATTCTTTCACTGCAAGAAGTGTGGATGTTGCTATTCGGTGGGTCTTCGTGATAATCATTCATGTGTCGAGAACTCCATGCGGCATCACTGTCCCATATGTTATGAGTATCTTTTTGACTCACTCAAGGATACCACAGTCATGGTTTGTGGACACACAATGCATTGTGAATGTTACAATGAGATGATACTGTTGTCCAATATGCTCCAAGTCTGTAAGAGATATGACTAG 597 0.4389 MEGSADERLDFGKMGFGCKHYRRRCRIRAPCCNEIFPCRHCHNEATSMLRNPFDRHELVRHDVKQVICAVCDTEQPVAQVCTNCGVNMGEYFCEVCKFYDDDTTKGQFHCDDCGICRVGGRDKFFHCKKCGCCYSVGLRDNHSCVENSMRHHCPICYEYLFDSLKDTTVMVCGHTMHCECYNEMILLSNMLQVCKRYD* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0405 198 ProSiteProfiles Zinc finger RING-type profile. 153 194 IPR001841 -
Vvi5g0405 198 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 195 IPR013083 -
Vvi5g0405 198 ProSiteProfiles Zinc finger CHY-type profile. 11 86 IPR008913 GO:0008270
Vvi5g0405 198 Pfam CHY zinc finger 18 98 IPR008913 GO:0008270
Vvi5g0405 198 SUPERFAMILY Zinc hairpin stack 89 146 IPR037275 -
Vvi5g0405 198 SUPERFAMILY CHY zinc finger-like 16 87 IPR037274 GO:0008270
Vvi5g0405 198 ProSiteProfiles Zinc finger CTCHY-type profile. 88 152 IPR017921 -
Vvi5g0405 198 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 11 194 - -
Vvi5g0405 198 SUPERFAMILY RING/U-box 152 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0405 Vvi-Chr5 3519656 3523138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0405 10 182 C2H2 Transcription Factor Family AT3G18290 39.106 5.72e-36 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0405 K10144 - vvi:100261415 425.631