Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0402 ATGGCGAAACCCTCGAAATCGCAGGTTTCATCCGATGAGGCCTTATCGAATGGCTCAAACTCCTCCGAGGAAGAGCAACTGAACGATCAGATCAACGACGAAGAGGACGAGGAGGAGCTTGAAGCGGTCACGAGGACTGCCGTCTCTGAGGACGAGGATGAAGAAGCCGCTGACGGGGGCAACTCGCCTGCCACAGAAGACGATGCTGCCGGCGATAGCAGCGACGGCGAGGAAGACGAGGAGGATGGAAATGCTGTGGGTGGCACTGAAATTAGCAAGCGTGAAAAGGCCAGGCTTAAAGAAATGCAGAAGATGAAGAAACAGAAGATCCAGGAAATATTGGATGCTCAAAATGCTGCTATTGATGCCGATATGAACAATAGAGGGAAGGGACGCTTGAAGTATCTCTTGCAGCAGACAGAGATTTTTGCTCATTTTGCCAAGGGTGATCAATCCACATCTCAGAAAAAGACAAAGGGAAGGGGTCGCCATGCATCAAAAGTGACTGAAGAGGAAGAAGATGAAGAGTGCCTGAAAGAGGAAGAAGATGGTTTATCTGGGACAGGAAACACGCGGCTGGTGACACAGCCCTCATGTATTCAGGGAAAGATGAGAGATTACCAACTTGCTGGCCTAAACTGGCTCATACGGCTGTATGAGAATGGCATCAATGGAATCCTCGCAGATGAAATGGGTCTGGGTAAAACATTGCAAACCATTTCTTTATTGGGTTATCTGCATGAGTTTAGAGGAATAACTGGTCCCCACATGGTTGTTGCCCCAAAATCGACTCTTGGCAACTGGATGAATGAAATTCGACGTTTTTGTCCAGTTCTGCGTGCTGTGAAGTTTCTTGGAAATCCTGATGAAAGGAGGCATATACGTGACAATTTACTGGTTGCTGGGAAATTTGATGTCTGTGTCACTAGTTTCGAGATGGCCATCAAAGAGAAAACTACATTGCGACGCTTTAGTTGGCGCTATATCATCATTGATGAAGCTCATCGAATCAAGAATGAGAATTCTCTTCTTTCAAAGACAATGAGACTATATAGTACGAACTACCGCCTTCTTATCACGGGTACACCACTTCAGAACAATCTTCATGAACTATGGTCTCTTCTCAACTTTCTACTGCCCGAGATATTTAATTCAGCTGAGACTTTTGATGAATGGTTCCAAATTTCTGGAGATAATGACCAGCAGGAGGTTGTTCAACAGCTTCATAAGGTCCTCCGGCCTTTCCTCCTTCGGAGACTGAAGTCAGATGTTGAGAAAGGCTTGCCTCCAAAAAAGGAAACAATACTTAAAGTAGGCATGTCTCAATTGCAGAAACAGTTCTACAGGGCTTTACTACAAAAAGACCTTGAAGTTGTTAATGCTGGTGGAGAACGCAAACGTCTTTTGAATATTGCAATGCAACTGCGTAAATGCTGCAATCACCCATATCTTTTCCAAGGTGCTGAACCTGGACCTCCTTATACGACAGGAGAGCACCTTATTACGAATTCTGGTAAGATGGTTCTTTTGGATAAGCTACTTCCAAAGCTAAAAGAGCGTGATTCTAGGGTTCTAATATTTTCACAGATGACAAGGTTGCTGGACATTCTTGAAGATTACTTGATGTTTCGAGGATACCTGTATTGTCGAATTGATGGAAATACAGGGGGAGAAGATCGTGATGCCTCCATTGATGCATTTAATAAACCCGGAAGTGAGAAATTTGTGTTCTTACTGTCAACTAGAGCTGGAGGTCTTGGTATCAATCTTGCTACTGCAGATGTTGTCATCCTTTATGACAGTGACTGGAACCCCCAAGTTGATTTGCAAGCACAAGATCGTGCTCATCGGATTGGTCAAAAGAAAGAAGTTCAAGTGTTTCGATTCTGCACAGAGTATACCATCGAGGAAAAGGTGATTGAGAGAGCTTATAAAAAATTGGCACTCGATGCTTTGGTGATTCAACAAGGACGGTTAGCAGAGCAGAAAACTGTGAACAAAGATGAGCTACTGCAAATGGTCAGGTTTGGTGCTGAAATGGTTTTCAGCTCCAAGGATAGCACAATTACGGATGAAGACATAGACAGGATCATTGCTAAAGGAGAAGAGGCAACAGCTGAGCTTGATGCTAAGATGAAGAAATTTACAGAAGATGCCATCAAATTTAAAATGGATGATACTGCTGAGTTGTATGATTTTGATGATGAAAAGGATGAGAACAAGTTTGACTTCAAGAAAATTGTCAGTGAAAACTGGATTGAGCCACCAAAAAGAGAGCGGAAGCGGAATTACTCAGAGTCTGAATACTTTAAGCAAACAATGCGGCAAGGTGCTCCAGCAAAACAAAGAGAGCCTAGAATACCGCGCATGCCCCAGCTGCATGATTTCCAATTCTTTAACACACAAAGGCTGAATGAGTTGTATGAGAAAGAAGTGCGGTACCTCATGCAAACACATCAAAAGAATCAGTTAAAAGACTCCATAGATGTGGATGAACCTGAAGACTTGGGAGATCCCTTGACTGCCGAGGAGCAGGAAGAAAAGGAGAGATTATTAGAAGAGGGATTTTCATCATGGAGTAGAAGAGATTTCAATACTTTCATTAGGGCTTGTGAGAAGTATGGCCGGAATGATGTAAAAAGTATTGCTTCTGAAATGGAAGGGAAGACAGAGGAGGAAGTTGAGAGATATGCAAAAGCCTTCAAAGAAAGATACAAAGAATTAAATGATTATGATAGGATCATCAAGAACATTGAAAGAGGAGAGGCTAGAATTTCTAGGAAAGATGAGATCATGAAAGCAATTGGGAAGAAGTTGGATCGCTACAAGAATCCATGGCTGGAACTAAAGATCCAGTATGGGCAAAACAAAGGGAAGTTGTACAATGAAGAATGCGATCGTTTTATGATATGCATGGTTCACAAACTTGGATATGGGAACTGGGATGAGCTGAAGGCAGCATTTCGCACTTCTCCCTTGTTTCGTTTTGATTGGTTTGTAAAGTCTCGCACAACCCAAGAGCTTGCAAGAAGATGTGATACCCTCATTCGATTAGTGGAGAGGGAAAATCAAGAATTTGATGAGAGGGAGAGACAGGCACGGAAAGAGAAGAAGCTTGCCAAGAATATGACACCATCAAAGCGTGCCATGGCAAGGCAGGCAACTGAGAGCCCGACCTCTGTAAAGAAACGGAAACAACTGTTGATGGATGACTACGTGAGCTCGGGCAAGAGGAGGAAATGA 3243 0.4332 MAKPSKSQVSSDEALSNGSNSSEEEQLNDQINDEEDEEELEAVTRTAVSEDEDEEAADGGNSPATEDDAAGDSSDGEEDEEDGNAVGGTEISKREKARLKEMQKMKKQKIQEILDAQNAAIDADMNNRGKGRLKYLLQQTEIFAHFAKGDQSTSQKKTKGRGRHASKVTEEEEDEECLKEEEDGLSGTGNTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPDERRHIRDNLLVAGKFDVCVTSFEMAIKEKTTLRRFSWRYIIIDEAHRIKNENSLLSKTMRLYSTNYRLLITGTPLQNNLHELWSLLNFLLPEIFNSAETFDEWFQISGDNDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQLQKQFYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLITNSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYLYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDEKDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGAPAKQREPRIPRMPQLHDFQFFNTQRLNELYEKEVRYLMQTHQKNQLKDSIDVDEPEDLGDPLTAEEQEEKERLLEEGFSSWSRRDFNTFIRACEKYGRNDVKSIASEMEGKTEEEVERYAKAFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTTQELARRCDTLIRLVERENQEFDERERQARKEKKLAKNMTPSKRAMARQATESPTSVKKRKQLLMDDYVSSGKRRK* 1081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0402 1080 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 163 1064 - -
Vvi5g0402 1080 Coils Coil 92 119 - -
Vvi5g0402 1080 Gene3D - 855 909 - -
Vvi5g0402 1080 Gene3D - 205 420 IPR038718 -
Vvi5g0402 1080 SMART helicmild6 535 619 IPR001650 -
Vvi5g0402 1080 MobiDBLite consensus disorder prediction 1 103 - -
Vvi5g0402 1080 SUPERFAMILY Homeodomain-like 910 1032 IPR009057 -
Vvi5g0402 1080 MobiDBLite consensus disorder prediction 1029 1043 - -
Vvi5g0402 1080 Gene3D ISWI, HAND domain 756 854 IPR036306 GO:0003677|GO:0006338|GO:0031491
Vvi5g0402 1080 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 509 660 IPR001650 -
Vvi5g0402 1080 SMART ultradead3 200 392 IPR014001 -
Vvi5g0402 1080 MobiDBLite consensus disorder prediction 27 41 - -
Vvi5g0402 1080 Pfam SLIDE 912 1022 IPR015195 GO:0003677|GO:0005634|GO:0006338
Vvi5g0402 1080 Pfam Helicase conserved C-terminal domain 507 619 IPR001650 -
Vvi5g0402 1080 CDD SANT 858 902 IPR001005 -
Vvi5g0402 1080 CDD DEXHc_SMARCA1_SMARCA5 201 421 IPR044754 GO:0005524
Vvi5g0402 1080 FunFam ISWI chromatin-remodeling complex ATPase CHR11 425 717 - -
Vvi5g0402 1080 FunFam Chromatin-remodeling complex ATPase 205 420 - -
Vvi5g0402 1080 SMART sant 957 1018 IPR001005 -
Vvi5g0402 1080 SMART sant 855 904 IPR001005 -
Vvi5g0402 1080 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 419 IPR027417 -
Vvi5g0402 1080 CDD SF2_C_SNF 504 630 - -
Vvi5g0402 1080 MobiDBLite consensus disorder prediction 86 103 - -
Vvi5g0402 1080 Pfam HAND 768 850 IPR015194 GO:0003677|GO:0006338|GO:0031491
Vvi5g0402 1080 Coils Coil 1016 1039 - -
Vvi5g0402 1080 Gene3D iswi atpase 910 942 - -
Vvi5g0402 1080 FunFam ISWI chromatin-remodeling complex ATPase CHR11 756 854 - -
Vvi5g0402 1080 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 421 702 IPR027417 -
Vvi5g0402 1080 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 216 381 IPR014001 -
Vvi5g0402 1080 MobiDBLite consensus disorder prediction 1048 1062 - -
Vvi5g0402 1080 SUPERFAMILY Homeodomain-like 858 908 IPR009057 -
Vvi5g0402 1080 MobiDBLite consensus disorder prediction 823 844 - -
Vvi5g0402 1080 Gene3D - 943 1046 - -
Vvi5g0402 1080 MobiDBLite consensus disorder prediction 1 26 - -
Vvi5g0402 1080 MobiDBLite consensus disorder prediction 1029 1063 - -
Vvi5g0402 1080 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 767 857 IPR036306 GO:0003677|GO:0006338|GO:0031491
Vvi5g0402 1080 ProSiteProfiles SANT domain profile. 854 906 IPR017884 -
Vvi5g0402 1080 MobiDBLite consensus disorder prediction 70 85 - -
Vvi5g0402 1080 MobiDBLite consensus disorder prediction 148 192 - -
Vvi5g0402 1080 Pfam SNF2-related domain 217 484 IPR000330 GO:0005524|GO:0140658
Vvi5g0402 1080 FunFam ISWI chromatin-remodeling complex ATPase CHR11 isoform A 855 909 - -
Vvi5g0402 1080 FunFam ISWI chromatin-remodeling complex ATPase CHR11 943 1046 - -
Vvi5g0402 1080 Gene3D - 425 717 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0402 Vvi-Chr5 3495472 3504265 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0402 196 646 RAD5 or RAD16-like Gene Family AT1G02670 27.087 3.31e-42 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vvi5g0402 SNF2_N 3.8e-71 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0402 K11654 - vvi:100244281 2039.23