LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi5g0401	ATGGGTGGGTGTTTTCCTTGTTTCGGATCATCCAACAAGGAGGGTAATGGAGTGAAGAAAGATGTGGCCAAGAAGGATTCAGTTAAGGACGGCTCATCTGCTCAGTCTCATCATGTGACCAGAGTTAGTTCAGACAAATCAAAATCTCGGAGCGGTTCTGATTCTAAGAAGGAACCTGCAGTTCCAAAAGATGGACCAACAGCACATATTGCTGCACAAACATTTACGTTTCGGGAGCTTGCTGCTGCCACAAAGAACTTCAGGCCAGAGTCTCTGCTGGGTGAAGGAGGGTTTGGGCGTGTTTACAAAGGTCGCTTAGAGAGCACTGGACAAGTAGTTGCTGTGAAACAACTTGACCGAAATGGCCTTCAAGGAAATAGAGAATTCTTGGTGGAGGTTCTCATGCTTAGCCTCTTACATCACCCAAACCTTGTTAACTTGATTGGTTATTGTGCTGATGGGGACCAACGTCTGCTTGTCTATGAGTTTATGCCATTGGGATCATTGGAGGATCATTTACATGATCTTCCACCAGACAAGGAGCCTCTGGACTGGAACACAAGGATGAAGATTGCTGCTGGTGCAGCTAAAGGTTTGGAGTATTTGCATGATAAAGCAAGCCCTCCTGTCATATACAGGGATTTAAAATCCTCCAACATCCTTCTTGATGAGGGATATCATCCTAAATTATCAGATTTTGGGCTTGCAAAGCTGGGACCTGTTGGTGATAAGACTCATGTCTCCACAAGGGTGATGGGGACGTATGGTTATTGCGCTCCTGAATATGCTATGACTGGCCAACTTACTCTGAAGTCTGATGTTTATAGTTTTGGTGTCGTTTTCCTTGAACTTATCACAGGGCGTAAAGCTATTGATAACAATCGGGCTGCTGGTGAGCATAACCTTGTTGCATGGGCACGACCACTTTTCAAGGACCGTAGGAAGTTCCCTAAGATGGCTGATCCACTACTGCAAGGCCGTTATCCAATGCGAGGACTTTACCAAGCTCTAGCAGTCGCAGCCATGTGTTTGCAAGAACAAGCAGCTACAAGACCTCTAATAGGGGATGTTGTGACTGCGCTCACATATTTAGCCTCCCAAACTTACGACCCAAATGCAGCCTCTGCTCAGAGTAATAGAGTTGGTCCCTCTACTCCTAGGAGCAAGGATGACAGGAGGAGCCTACCAGATGGATTGGATAGCCCAGATAATCCTGGACGTGGTGGCCGACTTGGCTCCCCTTCCACTCATAAGAATTCACCTGATTTCAGGAGGAGAGATCCTCTAAGGGATTTGAGCACTGCCACAGACTTAGGCAGGAGTGAAGCTGATGGTGGGTCTGGGAGGAAATGGGGCTTGGATGAATTAGAGCGACAGGAATCTCAGAGAGACATCCCCATAAGTGCTGGACGAGCTAGGGACACTGAGAGAGACATCCCCATAAGTTCTGGGCGAGCAAGGGAAACTCCAAGAAATCGGGATTTAGATAGAGAACGTGCAGTTGCAGAGGCAAAAGTGTGGGGAGAGAATTGGAGAGAGAAAAAGCGAGCAAATGTGGTTGGTAGCTTTGACGGAACAAATGGGTAA	1587	0.472	MGGCFPCFGSSNKEGNGVKKDVAKKDSVKDGSSAQSHHVTRVSSDKSKSRSGSDSKKEPAVPKDGPTAHIAAQTFTFRELAAATKNFRPESLLGEGGFGRVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEPLDWNTRMKIAAGAAKGLEYLHDKASPPVIYRDLKSSNILLDEGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNNRAAGEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQTYDPNAASAQSNRVGPSTPRSKDDRRSLPDGLDSPDNPGRGGRLGSPSTHKNSPDFRRRDPLRDLSTATDLGRSEADGGSGRKWGLDELERQESQRDIPISAGRARDTERDIPISSGRARETPRNRDLDRERAVAEAKVWGENWREKKRANVVGSFDGTNG*	529

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi5g0401	528	MobiDBLite	consensus disorder prediction	1	68	-	-
	Vvi5g0401	528	SMART	serkin_6	87	364	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi5g0401	528	Pfam	Protein kinase domain	90	301	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi5g0401	528	ProSiteProfiles	Protein kinase domain profile.	87	364	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi5g0401	528	MobiDBLite	consensus disorder prediction	443	498	-	-
	Vvi5g0401	528	MobiDBLite	consensus disorder prediction	373	498	-	-
	Vvi5g0401	528	MobiDBLite	consensus disorder prediction	17	32	-	-
	Vvi5g0401	528	FunFam	Serine/threonine-protein kinase PBS1	164	379	-	-
	Vvi5g0401	528	SUPERFAMILY	Protein kinase-like (PK-like)	69	361	IPR011009	-
	Vvi5g0401	528	Gene3D	Transferase(Phosphotransferase) domain 1	164	382	-	-
	Vvi5g0401	528	MobiDBLite	consensus disorder prediction	419	433	-	-
	Vvi5g0401	528	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	210	222	IPR008271	GO:0004672\|GO:0006468
	Vvi5g0401	528	CDD	STKc_IRAK	93	362	-	-
	Vvi5g0401	528	MobiDBLite	consensus disorder prediction	41	63	-	-
	Vvi5g0401	528	PANTHER	OS07G0668900 PROTEIN	4	373	-	-
	Vvi5g0401	528	FunFam	Serine/threonine-protein kinase PBS1	60	163	-	-
	Vvi5g0401	528	ProSitePatterns	Protein kinases ATP-binding region signature.	93	116	IPR017441	GO:0005524
	Vvi5g0401	528	Gene3D	Phosphorylase Kinase; domain 1	71	163	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi5g0401	Vvi-Chr5	3486011	3493216	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi5g0401	4	366	Glycoside Hydrolase	AT3G07070	64.463	4.70e-167	478

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VIIa-1	Vvi5g0401		Pkinase	3.1e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi5g0401	-		-	vvi:100249446	1041.18