Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0396 ATGGAAGCGTCGTCTCCCCGAACATCATCGTCGTCATCGTTGTCGTCGTCGTCGTCGTCGTCGCGGATGAGTCGAGGCAAATTCGTGAAGAAGGTGATGGCGCCGGCAATCGAAGGGAAGTCGTGTCCGATATGCTTGAGCCACGTGGTTGATCGGAGAGCGGCGGTTATCACCGCCTGTCTTCATGCCTACTGCTTCCGATGCATTCGGAGGTGGAGTGATTTGAAGAGGAAATGCCCTCTCTGCAATGCTCACTTCGATTCTCTGTTCTACCGCATTAGCCTCTCTTCTCAAACCTTTCTTAAGGAGAAGTTGCGGCCTCTCGCGGAGGGTGGAACGGTCAATTTTGGAGGTGGAAATGCCGGCCGAAGGGTTCTCAGAAGATATTGGGATGAATCAAACAGTGATAGCAGGAGAACAAGGCCGTTGCCATGGCGGCGATCTTTTGGTAGGCCAGGATCTTTGCCTTCTGATGTTGTTGCTGAAAGAATTCTTCAGTGGCGTGCCAGCATATACAGCCAAGGTATGCAGGCTGTTCCTTTTTCTCCCAGGAATCGTCTTAAACAGAATATATCAGGAAATAGCAGTGCCAAAGAAAGAATACTGCAGAGGATTGAACCATGGATTCAAAGAGAGCTGCATGCTATTCTTCATGATCCAGATGCAGCTGTTATTGTTCATGTTGCAACCTCGCTTTTTGTCTCAAGCCTTGAAGAGAACACTCCTTTAGGATATCTTGGTGGTGAAGATGACTTTCTAGCACCTCTGCGATCTTTTCTGCACAACCAGACTAATACATTTTGGCATGAACTTAGTTGTTTTGCAGACAGCACATTTAACATGGAAACGTATGATGCAGTGGTTAAATATGAACCATCGGGTTAA 885 0.4768 MEASSPRTSSSSSLSSSSSSSRMSRGKFVKKVMAPAIEGKSCPICLSHVVDRRAAVITACLHAYCFRCIRRWSDLKRKCPLCNAHFDSLFYRISLSSQTFLKEKLRPLAEGGTVNFGGGNAGRRVLRRYWDESNSDSRRTRPLPWRRSFGRPGSLPSDVVAERILQWRASIYSQGMQAVPFSPRNRLKQNISGNSSAKERILQRIEPWIQRELHAILHDPDAAVIVHVATSLFVSSLEENTPLGYLGGEDDFLAPLRSFLHNQTNTFWHELSCFADSTFNMETYDAVVKYEPSG* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0396 294 ProSitePatterns Zinc finger RING-type signature. 60 69 IPR017907 -
Vvi5g0396 294 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 101 IPR013083 -
Vvi5g0396 294 MobiDBLite consensus disorder prediction 1 22 - -
Vvi5g0396 294 Pfam Ring finger domain 41 83 IPR001841 -
Vvi5g0396 294 CDD RING-HC_Topors 41 86 - -
Vvi5g0396 294 ProSiteProfiles Zinc finger RING-type profile. 42 83 IPR001841 -
Vvi5g0396 294 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TOPORS 10 292 - -
Vvi5g0396 294 SMART ring_2 42 82 IPR001841 -
Vvi5g0396 294 SUPERFAMILY RING/U-box 36 89 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0396 6 272 C3H Transcription Factor Family AT2G39100 47.253 7.05e-80 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0396 - - vvi:100259613 567.385