Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0393 ATGTTGAAGCCGTATGGAGCTATAGTTGGAGGTGCTGCGGGGGTGCTTGCACTAGTGGCAGTAGTTGTTGGATTTGTATGGTTTTGCAAGTTACAGTGTAAAAACTTCTCAAACAAGAACTCAGAGACAGGTTCCTCAGATCCATCTGCACCAGTGGAATGGAATAGGAGAGGTGGACCCAGCTCAGCTGCAGCCCCGCCTCTATCCGGACCACAGGGAGCAAGACAGTTCACAATGGAAGAATTGGAGCAAGCTACCAAGCAATTCAATGAAAGCAATCTAATCGGATATGGAAGCTTTGGTTTGGTTTATAAAGGTTTCCTTTCTGATGGGACTATTGTGGCCATCAAAAGGCGTCCAGGCCCTCCTAGACGGGAATTTGTTGCTGAGGCAACTAATTTGTCAGAGATTCAACACCGTAATCTAGTTACTCTTCTGGGTTACTGCCAGGAAAGTGGATCACAAATGTTAGTTTTTGAATATCTACCCAATGGCAGCATGTGCAATCATTTGTATGATACTGGGCTAGATGCAACAACAAAACTAGAGTTCAAGCGAAGGCTGTCCATAGCTCTAGGGGCAGCCAAAGGTTTACGTCATTTGCATACTCTAAAGCCTCCCTTAGTACACAGGAATTTCAAGACGGCTAATGTCTTGGTTGATGAGAACTTTATTGCCAAGGTTGCAGATACAGGGATTTCACGATTACTTGAAAAAATAGAAGATGCAGGTCCATCTCAAACACCCAGTGTCAATGTTTTCCAACATCCAGAGATAGAAGAATCAAGAACTTTCTCTGAGATAAGTGATGTATACAGCTTTGGAGTTTTCCTCTTGGAGCTTATAACTGGACGGGAGGCCTTATATGATGAGTCCTTTGGATCTGATGAAAGCTTATTTCAATGGGTGGAAACTCGTCTGAGTATAAATGATTTTGTGGACCATCGGCTAGTTGGAAGCTTTACCATGGAGGGAATGAAGGACTTGATCAAGCTTATGTTGCAATGCATGAGTCTTTCAGGAAAATGGCAACTGAAGATTGAAAAAGTTGTGCTTGAGCTTGAAAGGATTCATGAAAAAGAGATGGCTCTGACCACAGGCATGGGCGAGGGCACTACTAAATTTACTTTGGGGAGCCAACTGTTTACTTCAAAATGA 1158 0.4335 MLKPYGAIVGGAAGVLALVAVVVGFVWFCKLQCKNFSNKNSETGSSDPSAPVEWNRRGGPSSAAAPPLSGPQGARQFTMEELEQATKQFNESNLIGYGSFGLVYKGFLSDGTIVAIKRRPGPPRREFVAEATNLSEIQHRNLVTLLGYCQESGSQMLVFEYLPNGSMCNHLYDTGLDATTKLEFKRRLSIALGAAKGLRHLHTLKPPLVHRNFKTANVLVDENFIAKVADTGISRLLEKIEDAGPSQTPSVNVFQHPEIEESRTFSEISDVYSFGVFLLELITGREALYDESFGSDESLFQWVETRLSINDFVDHRLVGSFTMEGMKDLIKLMLQCMSLSGKWQLKIEKVVLELERIHEKEMALTTGMGEGTTKFTLGSQLFTSK* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0393 385 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 13 367 IPR047117 -
Vvi5g0393 385 Gene3D Phosphorylase Kinase; domain 1 63 161 - -
Vvi5g0393 385 FunFam receptor-like protein kinase FERONIA 60 161 - -
Vvi5g0393 385 Gene3D Transferase(Phosphotransferase) domain 1 162 372 - -
Vvi5g0393 385 ProSiteProfiles Protein kinase domain profile. 89 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0393 385 MobiDBLite consensus disorder prediction 39 73 - -
Vvi5g0393 385 FunFam Protein kinase superfamily protein 162 371 - -
Vvi5g0393 385 ProSitePatterns Protein kinases ATP-binding region signature. 95 117 IPR017441 GO:0005524
Vvi5g0393 385 SUPERFAMILY Protein kinase-like (PK-like) 68 340 IPR011009 -
Vvi5g0393 385 Pfam Protein tyrosine and serine/threonine kinase 93 337 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0393 Vvi-Chr5 3423538 3425835 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0393 6 357 Receptor kinase-like Gene Family AT1G79620 36.240 7.69e-57 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXa Vvi5g0393 PK_Tyr_Ser-Thr 3.1e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0393 - - vvi:100264795 720.694