Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0389 ATGAGGAAAAATGAGAATAAGGGAGGGAGGGGGGCGGGCGGGGTGATATTATTACGAGTAGGAGGCAACATCTCCCATGTTTGGCGCGTACACAAGGAAAGAGACGAAAAACAGCCACCTCTCTCAAAGCCCAAAGAGAGAAAGATCAAACGCTTTGAAAACGGGGCTCACAAAAACACACTCACACCAATACACAGGGACCTCACTATCCCCAATCCCCCCCTAATTCTAAGCTTTTTCCTCATCTATTTTCTCTCCCCGGGCTTCGCTTCATTTGATCCAAACCTTCCATTTCGGCTTTACTGGACATTCCAGAAACTTCCGAAACAGCTGAAGCATAGCGTTTTAGTTTTTGTTTTTAGGGGGGGGGGGGGGGGAGGGTGTGAATTCGCCCTTGGAGACCGTACAATGGACCGGTACGGTCGGGCACCGGCAATGGAGGGGTCGCCGTCCGATCCGTCGCAGGAATGGACGGGGCCGGTGGCCGAAACCGGGCTGGAAGAGCCTTTGTGGCAGTTGGGATTGGGGGGCGGTGGCGAGGCGTACCCGGAGCGGCCCGACGAGGCCGACTGCATCTACTATCTGAAGACGGGCTTTTGTGGGTATGGTGCGCGGTGTCGGTTCAATCATCCCCGTGATCGTGGTGGGGTGGGAGGAACTGTTAGACCTGGTGGAGGGGAGTTCCCAGAGCGAGTGGGCCAACCAGTATGCCAGTTTTATATGAAGACAGGGACCTGTAAATTTGGTGCTTCTTGCAAGTATCACCATCCAAGACAGGGAGGAGGAACTGTTAGCCCTGTGACACTAAACTATTTTGGATATCCATTGCGTCCGGGTGAAAAAGAGTGCTCCTACTATGTGAAGACAGGACTTTGCAAGTTTGGTGAAACATGTAAATTCCATCATCCACAGCCAGATAGCATACAACTGTCAACTCCAGGACCTGCAGCTCTGCCTGCACCTGTACCAGCACACACTTTATATCCCACGGTGCAGTCTCCATCAGTTCCTTCATCTCAACAATATGGGCTAGTAGTCGCAAGGCCTCCACTGTTACCAAGTTCATATTTCCATGGGCCTTACAGTCCTGTGTTGATTCCCCCAGGAATGGTTCCTTTTCCGGGTTGGAGTCATTACCCGGCACCTGTCAGTCCAGTAGCCTCTCCAAGTACTCAACCTACTGTTGGATCAGGCCAGATGTATGGGTTAACACCATTATCTCCTTCAGCGCCTGCCTATACAGGACCTTATACACCCTTACCTTCTTCTGTTGGTCCTTCAAGCAGTAGCCAGAAGGAGCAGATATTTCCAGAAAGACCTGGCCAACCTGAATGCCAATATTACATGAGAACAGGGGATTGCAAATTTGGATCCTCATGTAAATATCACCATCCACCAGAATGGGATACACCAAAAACAAATTGTGTCCTTAGTCCGATGGGTCTTCCTCTCCGTCCAGGTGCACCCCAATGCACTCACTATGCACAACGTGGAATATGCAAGTTTGGGCCCACATGCAAATTTGATCACCCAATGGGAACACTGAGTTATAGTCCATCTGCATCATCTCTGGCTGATATGCCAGTTGCTCCCTACCCTGTGGGATCTTCTATGGGTACACTTGCACCATCGTCTTCATCTTCGGATTTGAGGCCAGAACTTATTTCAGGATCTAGCAAGGAATCTCTTTCAACCAGAATGTCATCTTCTATGAGTACATCTAGTGGTTCAGTTGGTTCAATTTTTTCAAAGAGTGGGCCTGGTCATTCTAGTACCCAACAGCCTGTTCAGAGTTCTGGTCCTTCAACTGGCAGCAGTAGTTCGGAAGCTCATACTTCAAGCTAA 1845 0.4992 MRKNENKGGRGAGGVILLRVGGNISHVWRVHKERDEKQPPLSKPKERKIKRFENGAHKNTLTPIHRDLTIPNPPLILSFFLIYFLSPGFASFDPNLPFRLYWTFQKLPKQLKHSVLVFVFRGGGGGGCEFALGDRTMDRYGRAPAMEGSPSDPSQEWTGPVAETGLEEPLWQLGLGGGGEAYPERPDEADCIYYLKTGFCGYGARCRFNHPRDRGGVGGTVRPGGGEFPERVGQPVCQFYMKTGTCKFGASCKYHHPRQGGGTVSPVTLNYFGYPLRPGEKECSYYVKTGLCKFGETCKFHHPQPDSIQLSTPGPAALPAPVPAHTLYPTVQSPSVPSSQQYGLVVARPPLLPSSYFHGPYSPVLIPPGMVPFPGWSHYPAPVSPVASPSTQPTVGSGQMYGLTPLSPSAPAYTGPYTPLPSSVGPSSSSQKEQIFPERPGQPECQYYMRTGDCKFGSSCKYHHPPEWDTPKTNCVLSPMGLPLRPGAPQCTHYAQRGICKFGPTCKFDHPMGTLSYSPSASSLADMPVAPYPVGSSMGTLAPSSSSSDLRPELISGSSKESLSTRMSSSMSTSSGSVGSIFSKSGPGHSSTQQPVQSSGPSTGSSSSEAHTSS* 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0389 614 MobiDBLite consensus disorder prediction 412 441 - -
Vvi5g0389 614 SUPERFAMILY CCCH zinc finger 188 213 IPR036855 GO:0046872
Vvi5g0389 614 SUPERFAMILY CCCH zinc finger 443 466 IPR036855 GO:0046872
Vvi5g0389 614 MobiDBLite consensus disorder prediction 420 436 - -
Vvi5g0389 614 FunFam CCCH type zinc finger protein 437 522 - -
Vvi5g0389 614 SUPERFAMILY CCCH zinc finger 279 306 IPR036855 GO:0046872
Vvi5g0389 614 ProSiteProfiles Zinc finger C3H1-type profile. 439 467 IPR000571 GO:0046872
Vvi5g0389 614 Gene3D - 437 522 - -
Vvi5g0389 614 Gene3D - 184 260 - -
Vvi5g0389 614 SUPERFAMILY CCCH zinc finger 489 515 IPR036855 GO:0046872
Vvi5g0389 614 ProSiteProfiles Zinc finger C3H1-type profile. 485 513 IPR000571 GO:0046872
Vvi5g0389 614 SMART c3hfinal6 185 212 IPR000571 GO:0046872
Vvi5g0389 614 SMART c3hfinal6 277 304 IPR000571 GO:0046872
Vvi5g0389 614 SMART c3hfinal6 231 258 IPR000571 GO:0046872
Vvi5g0389 614 SMART c3hfinal6 439 466 IPR000571 GO:0046872
Vvi5g0389 614 SMART c3hfinal6 485 512 IPR000571 GO:0046872
Vvi5g0389 614 ProSiteProfiles Zinc finger C3H1-type profile. 277 305 IPR000571 GO:0046872
Vvi5g0389 614 ProSiteProfiles Zinc finger C3H1-type profile. 231 259 IPR000571 GO:0046872
Vvi5g0389 614 ProSiteProfiles Zinc finger C3H1-type profile. 185 213 IPR000571 GO:0046872
Vvi5g0389 614 MobiDBLite consensus disorder prediction 538 614 - -
Vvi5g0389 614 SUPERFAMILY CCCH zinc finger 234 259 IPR036855 GO:0046872
Vvi5g0389 614 Gene3D - 261 312 - -
Vvi5g0389 614 PANTHER PROTEIN PHOSPHATASE RELATED 177 548 - -
Vvi5g0389 614 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 489 512 IPR000571 GO:0046872
Vvi5g0389 614 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 279 304 IPR000571 GO:0046872
Vvi5g0389 614 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 441 466 IPR000571 GO:0046872
Vvi5g0389 614 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 234 258 IPR000571 GO:0046872
Vvi5g0389 614 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 187 212 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0389 Vvi-Chr5 3360350 3367379 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0389 137 576 C2H2 Transcription Factor Family AT5G18550 60.754 1.65e-165 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vvi5g0389 zf-CCCH 9.3e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0389 - - vvi:100257896 889.026