Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0388 ATGAGGATGATGGTCGGCTTCCTCCGCAAAGTCGCTCTGCTTCAGGTGAGGTTTACTCTCTCAGATTCTCCAACCCTACAAAGCTTGCCTTTTCTTCACTTCCACCACCACCCATTCTCATCTTCATCCAAAGCACACTCATTCACTGTGTCTCACCTCATAAACTCATGTGGCTTCTCCCATCAAGAGGCTCTATCAGCTTCCAAATTCATCCACTTTGAAACCCCCGAAAAACCCGATTCCGTCTTTTCCTTCTTCAACAGCCATGGCTTCTCCAAATCCCAAACCTCAAAAATTGTTAGATCACAACCTCAACTCATTGTATCCGACCCCGAGAAATCCCTTTTGCCCAAACTCCAATTTTTCTACTCCAAAGGCGTTTCTAAGCCTGACGTTGCCAGGATCGTAGTCTCTACCCCAGCCATCTTGAAACGAAGCTTGGAAAATCAAATCATCCCATCTTATAATTTCTTCAAAGATTTCTTTCAATCCGAAGAGATGGCAATGGGTATTGTTAAACGCTTTGCGCGGATTCTACTGTTTGATCTTCACACCTATGTGGAATCTAATATCAATGCGTTGCAAGAATTTGAAGTACCCAAATCAAATATTGCTGCATTGCTAAGGCACCAGCCTAGGGTATTCATGGTGCGGCCAAATCAGTTTAGGGAGATTTTGGAGGAAGTAAAGAAAATGGGGTTTGATCCTTCACAAATGAAGTTTGTTCTAGCAGTTCAAGCAATAAGAGGGATGTCAAAATCAACCTGGGAAAGGAAGATTGATGCTTATAAGAGCTGGTGCTGTTCTGAGGAAGAGATTCGTTTAGCCTTTTTAAAGTTACCCTGGTCTATGGTACTTTCCGAGGATAAATTAATGGCAACAATGGATTTCTACGTCAATAAAATGGGGTGGGAGTCTTCTTTCATTGCTCGCCGGCCGGTGCTTCTCTCGCTTAGCTTGGAGAAGAGAATTATTCCTCGGTATTCAGTTGTTCAAGTTTTGTTGTCAAAAGGTTTGATTAATAAAGATATTAGCCCAAGAGTTCTGTTTGAATCTACTGAACAGAAGTTTATGCAAAAGTTTGTAAATCTCTACAAGAAAGAAGCTTCTCAGTTATTGAACTTGTATCAGGAAAGGAAAAAGTCAATCTTCCAGAAAAAGCAAGATTGTCTCCCAGAGGGAAGGGGTAGTTTTAGAATTTGTACACCGTGA 1212 0.4167 MRMMVGFLRKVALLQVRFTLSDSPTLQSLPFLHFHHHPFSSSSKAHSFTVSHLINSCGFSHQEALSASKFIHFETPEKPDSVFSFFNSHGFSKSQTSKIVRSQPQLIVSDPEKSLLPKLQFFYSKGVSKPDVARIVVSTPAILKRSLENQIIPSYNFFKDFFQSEEMAMGIVKRFARILLFDLHTYVESNINALQEFEVPKSNIAALLRHQPRVFMVRPNQFREILEEVKKMGFDPSQMKFVLAVQAIRGMSKSTWERKIDAYKSWCCSEEEIRLAFLKLPWSMVLSEDKLMATMDFYVNKMGWESSFIARRPVLLSLSLEKRIIPRYSVVQVLLSKGLINKDISPRVLFESTEQKFMQKFVNLYKKEASQLLNLYQERKKSIFQKKQDCLPEGRGSFRICTP* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0388 403 SMART mt_12 274 305 IPR003690 GO:0003690|GO:0006355
Vvi5g0388 403 SMART mt_12 306 340 IPR003690 GO:0003690|GO:0006355
Vvi5g0388 403 SMART mt_12 205 235 IPR003690 GO:0003690|GO:0006355
Vvi5g0388 403 SMART mt_12 133 164 IPR003690 GO:0003690|GO:0006355
Vvi5g0388 403 SMART mt_12 97 128 IPR003690 GO:0003690|GO:0006355
Vvi5g0388 403 SMART mt_12 169 200 IPR003690 GO:0003690|GO:0006355
Vvi5g0388 403 PANTHER CGI-12 PROTEIN-RELATED 45 366 IPR003690 GO:0003690|GO:0006355
Vvi5g0388 403 FunFam Mitochondrial transcription termination factor-like 147 369 - -
Vvi5g0388 403 Gene3D Transcription termination factor 3, mitochondrial 147 374 IPR038538 -
Vvi5g0388 403 Pfam mTERF 250 357 IPR003690 GO:0003690|GO:0006355
Vvi5g0388 403 Pfam mTERF 84 239 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0388 Vvi-Chr5 3351985 3353196 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vvi5g0388 mTERF 3.1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0388 K15032 - vvi:100245862 761.525