Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0387 ATGATGGTCAGCTGCCTACGCAAAGCCCTTGTGCTCCAGGTGAGGTTTACTCTCTCAGCTTCACCAACCCGACAAAGCCTGCGTTTTCTTCTCCACCACCTCTACCCATTCTCATCCATTTCCCCTTCTGGGAAATCACAGTCATTCACTGTGTCTTACCTCATTGACTCATGTGGCCTCTCTCATAAAGATGCTCTGTCAGCTTCCAAATTCTTCTCTTTTGAAACCCCCGATAAACCCAATTCGGTCCTTGCCTTCTTCAACAGCCATGGCTTCTCGAAATCCCAAATCTCAAAAATCGTCAAATCACTACCTCGACTACTCGCATCCGATCCCGACAAAACCCTTTTGCCCAAACTCCAATTTTTCTACTCCAAAGGCGCTTCCAGGCCTGACGTTGCCAAAATCGTAGTCTCTACCCCAGGCATCTTGTATCGAAGCTTGGAAAATCAAATCATCCCATCTTTTAATTTCTTCAAAGATTTTCTTCAATCCGACGAGATGGCAATTACTGTTATTAAACGCTTTTCCCGGATTCTACTATTTGATCTTCACACCTATGTTGCATCTAATATCAATGCGTTGCAAGAATTTGGAGTCCCCAAATCAAATATTGCAGGATTGCTAATGAATCGGCCTATGGCATTCATGGTGAGGCCAAATCTGTTTAGGGAGAATTTGGAGGAAGTAAAGAAAATGGGGTTTAATCCTTCACAAATGAAGTTCGTTATAGCAATCCATGCAATGAGAGCGATGGGAAAATCAACCTGGGAAAGGAAGATTGATGCATATAAGAGGTGGGGTTGGTCTGAGGAAGAGATTCGGTTAGCCTTCATAAAGCTTCCCCGGTGTATGACTCATTCCGAGGATAAAATAATGGCAACAATGGATTTCTTCGTCAACAAAATGGGGAGGGAGTCTTCTTTGATTGCTCGCCGGCCCCTTCTTATCCCGCTTAGCTTGGAGAAGAGAATTATTCCTCGGTATTCAGTCATTCAAGTTTTGTTGTCAAAGGGTTTGATTAAGAACGACACTAGCCTGGTAGTTCTCTTTGAGTCTACTGAAAAGATGTTTCTGCGGAAGTTTGTGAATGGTTTCAAGGAGGAAGCTCCTCAGTTAATGAAACTGTATCAGGAAAAAATCAACCTTTCAAAAAAGCAAGACTGTCTCCAAGAGGGAAGTGGTGATTGTTGA 1194 0.4322 MMVSCLRKALVLQVRFTLSASPTRQSLRFLLHHLYPFSSISPSGKSQSFTVSYLIDSCGLSHKDALSASKFFSFETPDKPNSVLAFFNSHGFSKSQISKIVKSLPRLLASDPDKTLLPKLQFFYSKGASRPDVAKIVVSTPGILYRSLENQIIPSFNFFKDFLQSDEMAITVIKRFSRILLFDLHTYVASNINALQEFGVPKSNIAGLLMNRPMAFMVRPNLFRENLEEVKKMGFNPSQMKFVIAIHAMRAMGKSTWERKIDAYKRWGWSEEEIRLAFIKLPRCMTHSEDKIMATMDFFVNKMGRESSLIARRPLLIPLSLEKRIIPRYSVIQVLLSKGLIKNDTSLVVLFESTEKMFLRKFVNGFKEEAPQLMKLYQEKINLSKKQDCLQEGSGDC* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0387 397 Pfam mTERF 84 293 IPR003690 GO:0003690|GO:0006355
Vvi5g0387 397 Pfam mTERF 254 358 IPR003690 GO:0003690|GO:0006355
Vvi5g0387 397 Gene3D Transcription termination factor 3, mitochondrial 147 377 IPR038538 -
Vvi5g0387 397 FunFam Mitochondrial transcription termination factor-like 148 370 - -
Vvi5g0387 397 PANTHER CGI-12 PROTEIN-RELATED 46 367 IPR003690 GO:0003690|GO:0006355
Vvi5g0387 397 SMART mt_12 206 236 IPR003690 GO:0003690|GO:0006355
Vvi5g0387 397 SMART mt_12 275 306 IPR003690 GO:0003690|GO:0006355
Vvi5g0387 397 SMART mt_12 170 201 IPR003690 GO:0003690|GO:0006355
Vvi5g0387 397 SMART mt_12 307 341 IPR003690 GO:0003690|GO:0006355
Vvi5g0387 397 SMART mt_12 98 129 IPR003690 GO:0003690|GO:0006355
Vvi5g0387 397 SMART mt_12 134 165 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0387 Vvi-Chr5 3347859 3349052 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vvi5g0387 mTERF 6.6e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0387 K15032 - vvi:100252802 781.171