Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0386 ATGAGGATGATCGTTGGCTTCCTACGCAAAGCCCTTGTGCTCCAGGTGAGGTTCACTCTCACAGCTTCTCCAACCCCACAAAGCTTGCATTTTCTTCCCCACCACTTCTACCCATTCTCATCTTCCTCCACATCCATTTCCACTTCTGAAAGATCAGAGTCATTCACTGTGTCTTACCTCATTGACTCATGTGGCCTCTCTCATAAAGATGCTCTATCAGCTTCCAAATTACTCCGCTTTGAAACCCCCGAAAAACCCGATTCGGTCCTTGCCTTCTTCAACAGCCATGGCTTCTCCAAATCCCAAACCTCAAAAATCGTCAAATCGCTACCTCGACTACTCGCATCCGATCCCGACAAAACCCTTTTGCCCAAACTCCAATTCTTCTACTCCAAAGGCGCTTCCAAGCCTGATGTTGCCAAGATCGTAGTCTCAACCCCAGGCATCTTGAAACGAAGCTTGGAAAATCAAATCATTCCTTCTTTTAATTTCTTGAAAGATTTCCTTCAATCCGACGAGATGGCAATTACTGTTGTTAAACGCTTTTCCCGGATTCTGCTCTTTGATCTTCACACCTATGTGGCTTCTAATATGAATGCGTTGCAAGAATTTGGAGTACCCAAATCAAATATTGCAGGATTGCTAATGTATCGGCCTATGGCATTTATGGTGAATCCAAATTTGTTTAGGAAGAATTTGGAGGAAGTGAAGAAAATGGGGTTTAATCCGTCACAAATGAAGTTTGTTTTGGCAATCCAAGCAATGAGAGCGGGGGGAGAATCTTGCTGGGAAAGGAAGATTGATATATATAAGAAGTGGGGCTGGTCTGAGGAAGAGATTCGGTTGGCCTTTACAAAGTCTCCCTGGTGTATGATATATTCCGAGGATAAAATAATGGCAAAAATGGATTTCTTCGTCAATAAAATGGGGAGGGAGTCTTCTTTGATTGCTCACCGGCCCTTTCTTATCGGGCTTAGCTTGGAGAAGAGAATTATTCCTCGGTATTCAGTTGTTCAAGTTCTGTTGTCAAAGGGTTTGATCAATAAAGACATTAGCCTGGTAGTTCTGTTTGAGTCTACTGAAAAGACCTTTCTGGAAAGGTTTGTGAATGCTTACAAGGAGGAAGCTCCTCAGTTAATAAAACTGATGATGATTGGCTTCCTTCGCAAAGCCCCTGTGCTCCAGGTGAGGTTTAATCTCACAGCTTCTCCAACCCCACAAAGCTTGCATTTTCTTCTCGACCACCTCTACCTATTCTCATCTTCTTCTTCCACATCCATTTCAACTTCTGAAAAACCACACCCATTCACTGTGTCTTATCTCATAAACTCATGTGGCCTCTCTCATAAAGATGCTCGATCAGCTTCTAAATACGTCCACTTTGAAACCCCCGATAAACCCAATTCGGTCCTTGCCCTCTTCAACAGCCACGGGTTCTCCAAAACCCAAACCTCGAAAATCGTCAAAAAGGAACCTCAACTCCTCTTATCCGATCCCGACAAAACCCTTCTGCCCAAACTCCAATTTTTCTACTCCAAAGGCGCTTCCTGGCCTGACATTGCCAAGATCGTAGTCTGTTCCCCATCCATCTTGAAACGAAGCTTGGAAAATCAAATCATCCCATCTTTTAATTTCTTCAAAGATTTTCTTCAATCCGACAAGATGGCAATTACTGTTGTTAAACGCTTTTCCCGGATTCTACTATTTGATCTTCACACCTATGTGGCTTCTAATATGAATGCGTTGCAGGAATTTGGAGTTCCCAAATCAAATATTGCAGGATTGCTAATGAATCAGCCTATGGCATTCATGGTGAGGCCAAATTTGTTTAGGGAGAATTTGGAGGAAGTAAAGAAAATGGGGTCTAATCCTTCACAAATGAAGTTTGTTATAGCAATCCAAGCAATAAGAGCGGGGGGGAAATCTTCCTGGGAAAGGAAGATTGATATATATAAGAGGTGGGGTTGGTCTGAGGAAGAGATTCGGTTAGCCTTTACAAAGTCTCCCTGGTGTATGATATATTCCGAGGATAAAATAATGGCAACAATGGATTTCTTTGTCAATAAAATGGGGAGGGAGTCTTCTTCGATTGCTCGCCGGCCCCAGCTTATCTCGCCCAGTTTGGAGAAGAGAATTATTCCCCGGTATTCAGTTGTTCAAGTTTTGTTGTCAAAGGGTTTGATTAGTAAAGACTTCAGCCTGTCAGCAGTGTTTCAGTCTACTGAAATAATGTTTCTGCACAAGTTTGTGGATGTTTATAAGGAGGAAGCTCCTCAGTTATTGAACCTGGAGCATAAAGAAATGAAGCTCAATGATGTAGCCGAGGATTGCTTGTTCAACTCCGAGAATCCCTTCACCATCTCACTCCGTGTCTCCTACCTTCATACTTGA 2391 0.4287 MRMIVGFLRKALVLQVRFTLTASPTPQSLHFLPHHFYPFSSSSTSISTSERSESFTVSYLIDSCGLSHKDALSASKLLRFETPEKPDSVLAFFNSHGFSKSQTSKIVKSLPRLLASDPDKTLLPKLQFFYSKGASKPDVAKIVVSTPGILKRSLENQIIPSFNFLKDFLQSDEMAITVVKRFSRILLFDLHTYVASNMNALQEFGVPKSNIAGLLMYRPMAFMVNPNLFRKNLEEVKKMGFNPSQMKFVLAIQAMRAGGESCWERKIDIYKKWGWSEEEIRLAFTKSPWCMIYSEDKIMAKMDFFVNKMGRESSLIAHRPFLIGLSLEKRIIPRYSVVQVLLSKGLINKDISLVVLFESTEKTFLERFVNAYKEEAPQLIKLMMIGFLRKAPVLQVRFNLTASPTPQSLHFLLDHLYLFSSSSSTSISTSEKPHPFTVSYLINSCGLSHKDARSASKYVHFETPDKPNSVLALFNSHGFSKTQTSKIVKKEPQLLLSDPDKTLLPKLQFFYSKGASWPDIAKIVVCSPSILKRSLENQIIPSFNFFKDFLQSDKMAITVVKRFSRILLFDLHTYVASNMNALQEFGVPKSNIAGLLMNQPMAFMVRPNLFRENLEEVKKMGSNPSQMKFVIAIQAIRAGGKSSWERKIDIYKRWGWSEEEIRLAFTKSPWCMIYSEDKIMATMDFFVNKMGRESSSIARRPQLISPSLEKRIIPRYSVVQVLLSKGLISKDFSLSAVFQSTEIMFLHKFVDVYKEEAPQLLNLEHKEMKLNDVAEDCLFNSENPFTISLRVSYLHT* 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0386 796 Gene3D Transcription termination factor 3, mitochondrial 153 381 IPR038538 -
Vvi5g0386 796 Gene3D Transcription termination factor 3, mitochondrial 533 761 IPR038538 -
Vvi5g0386 796 Pfam mTERF 191 365 IPR003690 GO:0003690|GO:0006355
Vvi5g0386 796 Pfam mTERF 90 244 IPR003690 GO:0003690|GO:0006355
Vvi5g0386 796 Pfam mTERF 471 679 IPR003690 GO:0003690|GO:0006355
Vvi5g0386 796 Pfam mTERF 572 745 IPR003690 GO:0003690|GO:0006355
Vvi5g0386 796 PANTHER CGI-12 PROTEIN-RELATED 51 375 IPR003690 GO:0003690|GO:0006355
Vvi5g0386 796 SMART mt_12 662 693 IPR003690 GO:0003690|GO:0006355
Vvi5g0386 796 SMART mt_12 212 242 IPR003690 GO:0003690|GO:0006355
Vvi5g0386 796 SMART mt_12 485 516 IPR003690 GO:0003690|GO:0006355
Vvi5g0386 796 SMART mt_12 281 312 IPR003690 GO:0003690|GO:0006355
Vvi5g0386 796 SMART mt_12 521 552 IPR003690 GO:0003690|GO:0006355
Vvi5g0386 796 SMART mt_12 176 207 IPR003690 GO:0003690|GO:0006355
Vvi5g0386 796 SMART mt_12 104 135 IPR003690 GO:0003690|GO:0006355
Vvi5g0386 796 SMART mt_12 557 588 IPR003690 GO:0003690|GO:0006355
Vvi5g0386 796 SMART mt_12 694 728 IPR003690 GO:0003690|GO:0006355
Vvi5g0386 796 SMART mt_12 313 347 IPR003690 GO:0003690|GO:0006355
Vvi5g0386 796 SMART mt_12 140 171 IPR003690 GO:0003690|GO:0006355
Vvi5g0386 796 SMART mt_12 593 623 IPR003690 GO:0003690|GO:0006355
Vvi5g0386 796 FunFam Mitochondrial transcription termination factor-like 535 757 - -
Vvi5g0386 796 FunFam Mitochondrial transcription termination factor-like 154 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0386 Vvi-Chr5 3341975 3346821 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vvi5g0386 mTERF 3.8e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0386 K15032 - vvi:100257952 707.597