Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0382 ATGTTATCTCCGGGAATGGATTCTGCACGGGAAGGCGGTGGAGTTGCAGGCACAGTGCTAATCCCCATGAACTTTGTGTGGAGTTATGGTGGGAGAAGCGTGTATCTCAGTGGCTCTTTCACAGGGTGGACCAATCTTTATCAAATGTCACCAGTTGAGGGCTGCCCCACTGTGTTTCAAGTTATCTGTAGCTTAACACCCGGATATCACCAGTACAAGTTTTTTGTTGATGGGGAATGGAGACATGACGAGAACCAACCTTTTATAAGTTGTACCTATGGGATAGTGAACACTGTCCTCTTAGCTAGGGAGTCTGATTATATTCCACCAACCATTAGTCCAGCAGTGCCATCGCTAACTAACATGGATGTGGATAATGAGGCCTTTCAGCAATTGGTCAGAATTTCAGATGGTTCGCGGCATGAGGCAGTGCCAAGGATTCAAGAGACTGACTTAGAGGTCTCTCGTCATCGTGTTTCTTTGTTCTTGTCTACACACACAGTTTATGAGTTGCTTCCGGAGTCAGGCAAGGTTATTACTTTGGATGTTGATTTGCCTGTTAAGCAAGCATTTCATATTCTTTATGAGCAGGGAATTTCTATTGCTCCTCTTTGGGACTACTTCAAGGGGCGGTTTGTTGGAGTTCTTAGTGCACTGGATTTTATTTTGATTTTGAGGGAGCTTGGAAATCATGGGTCAAATCTGACAGAGGAAGAACTCGAGACACACACCATATCAGCCTGGAAAGAGGGAAAAGGATATCTGAATAGACAAATTGATGGGAATGGAAGAGCATTTTCAAGAGGTCTCATCCATGCTGGACCATATGATAATCTGAAAGATGTTGCTTTAAAGATTTTGGAAAATGAGGTGGCCACAGTTCCCATTATCCATTCATCTTCAGAAGATGGTTCTTTTCCGCAGCTTTTACACCTTGCTTCACTTTCTGGAATATTAAAATGTATTTGCAGGTATTTTAGACATTCTTCTAACTCCTTGCCGGTACTCCAACTACCAATTTTTGCAATTCCTGTTGGTACATGGGTTTCAGAAATTGGAGAAGCCAATCAAAGGCCACTGGCCAAGTTGCATCCAAGTGCTTCACTTAGTTCGGCCTTGAGCTTGTTAGTTCAAGCCCAAGTTAGTTCGATACCAATAGTTGATGACAATGACTCATTACTGGATATATATTCTCGAAGTGATATAACAGCCTTGGCCAAAAACAGAGTTTATGCACATATTAATCTTGACGACATGACTATTCATCAGGCATTGCAGCTCGGACAAGACCCTTATTCTCCATATGAGTTCAACAGTCAAAGATGTCAGATGTGTTTGCGAACCGACCCACTGCACGAAGTGATGGACCGATTAGCAAACCCAGGGGTTAGGCGGCTTGTCATTGTTGAAGCTGGCAGTAGGCGTGTCGAAGGCATCGTCTCCCTGAGGGACATTTTCAAGTTCTTACTTGGTTAG 1476 0.435 MLSPGMDSAREGGGVAGTVLIPMNFVWSYGGRSVYLSGSFTGWTNLYQMSPVEGCPTVFQVICSLTPGYHQYKFFVDGEWRHDENQPFISCTYGIVNTVLLARESDYIPPTISPAVPSLTNMDVDNEAFQQLVRISDGSRHEAVPRIQETDLEVSRHRVSLFLSTHTVYELLPESGKVITLDVDLPVKQAFHILYEQGISIAPLWDYFKGRFVGVLSALDFILILRELGNHGSNLTEEELETHTISAWKEGKGYLNRQIDGNGRAFSRGLIHAGPYDNLKDVALKILENEVATVPIIHSSSEDGSFPQLLHLASLSGILKCICRYFRHSSNSLPVLQLPIFAIPVGTWVSEIGEANQRPLAKLHPSASLSSALSLLVQAQVSSIPIVDDNDSLLDIYSRSDITALAKNRVYAHINLDDMTIHQALQLGQDPYSPYEFNSQRCQMCLRTDPLHEVMDRLANPGVRRLVIVEAGSRRVEGIVSLRDIFKFLLG* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0382 491 Gene3D - 345 491 IPR046342 -
Vvi5g0382 491 SUPERFAMILY CBS-domain pair 349 490 IPR046342 -
Vvi5g0382 491 SUPERFAMILY CBS-domain pair 157 328 IPR046342 -
Vvi5g0382 491 CDD E_set_AMPKbeta_like_N 25 100 - -
Vvi5g0382 491 Pfam Glycogen recognition site of AMP-activated protein kinase 21 106 IPR032640 -
Vvi5g0382 491 ProSiteProfiles CBS domain profile. 171 233 IPR000644 -
Vvi5g0382 491 SMART cbs_1 359 407 IPR000644 -
Vvi5g0382 491 SMART cbs_1 441 490 IPR000644 -
Vvi5g0382 491 SMART cbs_1 177 226 IPR000644 -
Vvi5g0382 491 SUPERFAMILY E set domains 21 102 IPR014756 -
Vvi5g0382 491 ProSiteProfiles CBS domain profile. 437 491 IPR000644 -
Vvi5g0382 491 Gene3D Immunoglobulins 18 102 IPR013783 -
Vvi5g0382 491 ProSiteProfiles CBS domain profile. 355 416 IPR000644 -
Vvi5g0382 491 Gene3D - 148 333 IPR046342 -
Vvi5g0382 491 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 151 489 - -
Vvi5g0382 491 FunFam Sucrose nonfermenting 4-like protein 18 103 - -
Vvi5g0382 491 Pfam CBS domain 440 490 IPR000644 -
Vvi5g0382 491 Pfam CBS domain 353 403 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0382 Vvi-Chr5 3280619 3299522 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0382 17 112 Protein tyrosine phosphatase (PTP) family AT3G01510 31.633 4.10e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0382 - - vvi:100240823 959.903