Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0371 ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATGTTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGATAAACATAGGGCATGTGGACGAGGACGGAGTGTTCACTGGTCAATTCTCCACCTTCGCTCTATGTGGTTTTGTCCGTGCTCAGGGAGATGCCGACAGCGCTGTGGATCGGCTCTGGCAGAAGAAGAAGGCGGAAGTCCGACAGCATTAG 249 0.498 MQNEEGQNMDLYIPRKCSATNRLITSKDHASVQINIGHVDEDGVFTGQFSTFALCGFVRAQGDADSAVDRLWQKKKAEVRQH* 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0371 82 PIRSF RPS21e 1 82 IPR001931 GO:0003735|GO:0005840|GO:0006412
Vvi5g0371 82 Gene3D - 1 81 IPR038579 -
Vvi5g0371 82 PANTHER 40S RIBOSOMAL PROTEIN S21 1 80 IPR001931 GO:0003735|GO:0005840|GO:0006412
Vvi5g0371 82 ProSitePatterns Ribosomal protein S21e signature. 11 19 IPR018279 GO:0003735|GO:0005840|GO:0006412
Vvi5g0371 82 Pfam Ribosomal protein S21e 1 76 IPR001931 GO:0003735|GO:0005840|GO:0006412
Vvi5g0371 82 FunFam 40S ribosomal protein S21 1 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0371 Vvi-Chr5 3179408 3180911 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0371 1 82 Cytoplasmic Ribosomal Protein Gene Family AT5G27700 81.707 8.77e-50 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0371 K02971 - vvi:100266516 171.014