Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0369 ATGATCAGGCTGCCAAAAATCATGGAAGAAGAACTAATGGACAGTCCTAAAGGAGATATTAAAGTAAGTTTTGGCTATCAATGTAATGGCAACAATGGTATCACTTGTGAGGTTTCCAATGGATATGAAATCATGCCTAGGATTAATGTCCGAAGAACCAGCAGTTTCTCTTGCTTATCTGGGGCTGCCTTAAGCGCCAATGCCACATTGGCAAACACAAATATCTGCAATGGTTTAATTGGGGCAGAAAAACTTCCTAGTTGGGATTCCCCCAATTCATTTCGCAGGGTTCCCTCTTCACCATCCCTTTCAAAGTTGGATATCTTATCATCTTCTCTACAAAGTAGTCTGTCAAATTTAAGTTGCAGTCCATCCACACAAAGTGAGGCTCTTGAAAATGATTCCTATTCATTGAAATCCATGAGTGCTCCTTCCAGAAGTGATGGTTTCCTAAATGCTATGGAAGTTCAAGTGGCAGGTGGAGCTGCTGGTGAAGACAGAGTTCAAGCTGTTTGTTCTGAAGAAAATGGGTGGCTTTTTTGTGCAATCTATGATGGATTCAATGGAAGAGATGCAGCTGATTTTCTGGCTGGAACATTGTATGAAACTATTGTATGCTACTTTAATTTATTGGACTGGGAATCAGAACAGGAGTTTGTTAGAACTTCCAATGGTTTAGGTTTGGATGGTTCCCTCCAAAATATTCTAGATGATGTGATATCTGATTCGTTTAGGCATAGAGTGCTTGATAGCCTCCAACGTTCTCTCAGTCAGGCAGAACATGATTTCTTATACATGGTTGAGCAGGAAATGGAAGATCGCCCTGATTTAGTGTCTGTTGGGTCTTGTGTTTTGGTTGTGCTTCTCATAGGAAACGATTTGTACACAGTGAATTTAGGAGACAGTAGAGCTGTATTGGCAACATATACTAAAGATTACATGAATGAGGATGAGAGATTGAAAGCCATCCAGCTCACAGACAGTCATACTGTTGATAATGAAGTTGAAAGAAATCAGCTTCTATGTGATCATCCTGATGATCCCTCAGTAATTGTTGGTGGGAGAGTAAAAGGAAAATTGAAGGTTACTCGTGCATTGGGAGTTGGTTACCTGAAACAGAAAAAACTGAATGATGCTTTGATGGGTATTCTTCGAGTTCGGAACCTCTTAAGTCCTCCATATATCTCTACACAGCCATCATTGAATGTCCACAATATCTCAAAGTCCGATCATTTTGTTATAGTTGGGAGTGATGGTTTGTTTGACTTCTTCAGCAATGATGAGGCGGTAGAGCTTGTCCATTCTTATATTTTGACCAATCCTTCTGGTGATCCAGCAAAGTTTCTATTGGAACAGCTAGTACTGAGAGCAGCAAATTGTGCAGGTTTCAGTATGGAAGAATTAATGAGTATCCCAGCTGGTAGGAGAAGGAAATACCATGATGATGTGACTGTAATTGTGATCATCCTTGGAACAAATCACCGCACTTCAAAGGCATCAACTTGCCTATAA 1512 0.4028 MIRLPKIMEEELMDSPKGDIKVSFGYQCNGNNGITCEVSNGYEIMPRINVRRTSSFSCLSGAALSANATLANTNICNGLIGAEKLPSWDSPNSFRRVPSSPSLSKLDILSSSLQSSLSNLSCSPSTQSEALENDSYSLKSMSAPSRSDGFLNAMEVQVAGGAAGEDRVQAVCSEENGWLFCAIYDGFNGRDAADFLAGTLYETIVCYFNLLDWESEQEFVRTSNGLGLDGSLQNILDDVISDSFRHRVLDSLQRSLSQAEHDFLYMVEQEMEDRPDLVSVGSCVLVVLLIGNDLYTVNLGDSRAVLATYTKDYMNEDERLKAIQLTDSHTVDNEVERNQLLCDHPDDPSVIVGGRVKGKLKVTRALGVGYLKQKKLNDALMGILRVRNLLSPPYISTQPSLNVHNISKSDHFVIVGSDGLFDFFSNDEAVELVHSYILTNPSGDPAKFLLEQLVLRAANCAGFSMEELMSIPAGRRRKYHDDVTVIVIILGTNHRTSKASTCL* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0369 503 FunFam Probable protein phosphatase 2C 40 131 499 - -
Vvi5g0369 503 ProSiteProfiles PPM-type phosphatase domain profile. 150 490 IPR001932 -
Vvi5g0369 503 CDD PP2Cc 163 490 IPR001932 -
Vvi5g0369 503 Gene3D - 118 499 IPR036457 -
Vvi5g0369 503 PANTHER PROTEIN PHOSPHATASE 2C 130 488 IPR015655 GO:0004722|GO:0006470
Vvi5g0369 503 Pfam Protein phosphatase 2C 167 439 IPR001932 -
Vvi5g0369 503 SMART PP2C_4 141 488 IPR001932 -
Vvi5g0369 503 SUPERFAMILY PP2C-like 164 491 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0369 Vvi-Chr5 3161045 3165334 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0369 16 501 PP2C-type Phosphatase Gene Family AT3G16560 67.073 0.0 628
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0369 - - vvi:100242615 936.791