Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0356 ATGAGAAAAGCTGACCAATGTCCCAGAGGCTTGTCCACTTCAAAGCCCAATCTTGTTGACCGGGTTAGGCCCATTTGTTTCGATCACAAGCAAAAAGATGTAGTGAAGGAAGAACCAGTGAAGCTGGTTTCTCCAAAGAATCCAATCCCTTTTGAAACAGTTTTCCTATCAAACATTGATCTTGCAGTGACTTTTCCTGTTGAAACTCTCTTCTTCTCTGAGGTTCCTCCAAGCAAGTGCTCCTCAACTGAAGATATATCAGAGAGAGTGAAGAGAGCAGTGGCTGAAGTGCTTCTTGTTCTTTACTATTTCTTGGCTGGGAGACTTTACTTCAACCATGAAAGTAAAAGGTTGGAGCTTCTGTGCAACAATGCTGGAGTGTTGTTTGTAACGAGGTTCAGATGTGGGGGTTTCTCAATTGGGATTGTGACAAACCATGGGGTTCTTGATGGAAGATCAGCTGTCGAGATGCTTCAGAATCTGGCTTCTATTTGTAGAGGAGAAGGCCTGAAACCCCAGTTTGTCTGCAATGACAGGAGATGCATGAGAGCAAGGAACCCACCTCAGATCAAGTACCCACATCAGGAATATGTAAAGCTAGCAGAGACTTCTTGTATTGCCTCCTCCTTCACCTTTCTGAACCAGTCATCCATCGTGGACATTAGGTCTAAACTATCACCACCTTTGCCACATGGGTTCTCAGGAAACGCAGTGATCACAGCTTTTGCCACTGCAAAAGTGTCTCATTTGGTTCAGAAGCCATTCTCATTCTGTGTTGAAATGGTGAAGGAAGCTGTAGATAGAGTAACAGATGATTACGTGAAGTCAGCCATAGATTGGCTGGAGGTTTCTAAAGGAATTCCTGCAACTTGCAATGGGAATTTCTATATTTCCGCTTGGAGGAAACTGCCTTTTGGTGAGCTTGATTTTGGGTTTGGAAAGCCTATTCATGGGGGGCCGTAG 963 0.4434 MRKADQCPRGLSTSKPNLVDRVRPICFDHKQKDVVKEEPVKLVSPKNPIPFETVFLSNIDLAVTFPVETLFFSEVPPSKCSSTEDISERVKRAVAEVLLVLYYFLAGRLYFNHESKRLELLCNNAGVLFVTRFRCGGFSIGIVTNHGVLDGRSAVEMLQNLASICRGEGLKPQFVCNDRRCMRARNPPQIKYPHQEYVKLAETSCIASSFTFLNQSSIVDIRSKLSPPLPHGFSGNAVITAFATAKVSHLVQKPFSFCVEMVKEAVDRVTDDYVKSAIDWLEVSKGIPATCNGNFYISAWRKLPFGELDFGFGKPIHGGP* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0356 320 Gene3D - 128 180 IPR023213 -
Vvi5g0356 320 Gene3D - 33 127 IPR023213 -
Vvi5g0356 320 Pfam Transferase family 218 319 - -
Vvi5g0356 320 Pfam Transferase family 41 131 - -
Vvi5g0356 320 Gene3D - 181 320 IPR023213 -
Vvi5g0356 320 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 42 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0356 Vvi-Chr5 3063214 3066030 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0356 42 320 Monolignol Biosynthesis Gene Families AT5G48930 26.221 4.30e-28 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0356 K15400 K13065 vvi:100251114 440.269