Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0355 ATGGTCGATAATCCTGGCGCTAGTGCTTCAACTGATGATGGCAGTATCAAGGAGCAAGACCGTTTGTTGCCAATCGCAAATGTTAGCCGGATCATGAAGCAAACTTTGCCGACTAATGCAAAAATCTCTAAGGAAGCCAAGGAGACGATGCAGGAGTGTGTGTCGGAGTTCATTAGTTTTGTCACAGGAGAAGCATCCGAGAAGTGCAAGAAGGAGAGAAGGAAGACGGTGAACGGGGACGACATCTGCTGGGCTCTGGCAGCACTAGGCTTTGATGACTATGCCGGGCCATTAAAAAGGTACTTACAAAGGTATAGAGAATTAGAAGGAGATAGAGTACTGAATCAAGAGAAGGCTGGCAACACTGAAGAAAACGATGAACCATCCTCATGTAGAGGTAGCCAACCAAGGAATTGA 417 0.4652 MVDNPGASASTDDGSIKEQDRLLPIANVSRIMKQTLPTNAKISKEAKETMQECVSEFISFVTGEASEKCKKERRKTVNGDDICWALAALGFDDYAGPLKRYLQRYRELEGDRVLNQEKAGNTEENDEPSSCRGSQPRN* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0355 138 FunFam Nuclear transcription factor Y subunit B-3 11 135 - -
Vvi5g0355 138 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 9 122 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vvi5g0355 138 SUPERFAMILY Histone-fold 19 123 IPR009072 GO:0046982
Vvi5g0355 138 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 22 86 IPR003958 -
Vvi5g0355 138 MobiDBLite consensus disorder prediction 113 138 - -
Vvi5g0355 138 Gene3D Histone, subunit A 10 135 IPR009072 GO:0046982
Vvi5g0355 138 ProSitePatterns NF-YB/HAP3 subunit signature. 53 69 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vvi5g0355 138 PRINTS CCAAT-binding transcription factor subunit A signature 50 68 - -
Vvi5g0355 138 PRINTS CCAAT-binding transcription factor subunit A signature 88 106 - -
Vvi5g0355 138 PRINTS CCAAT-binding transcription factor subunit A signature 69 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0355 Vvi-Chr5 3059660 3060076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0355 16 120 CCAAT-HAP3 Transcription Factor Family AT2G47810 77.143 1.18e-58 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vvi5g0355 CBFD_NFYB_HMF 7.9e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0355 K08065 - vvi:104879231 280.796