Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0345 ATGCAACCTCAATACCACAAACCCCGCTCCTACGGCCCTCCGGTCAAAATGGCGATTCCGCCGGCGCAACACTCTGATAACGACAGGAGCAGCGGCGAGCTACGCGCTTTGGATTGCAACCTTACCTCCCTCTGCGACCACATCCAATTGGAGGGCTTCACTTCGGGTTCCTTCTCTGACATCGTCGTCCACGCAATGGGCTCCACCTACCGCCTTCATCGCTTGATCCTCTCTCGCAGTTCTTACTTCAGGAACATGCTTCATGGTCCTTGGAAAGAAGCCAATGCTTCAATTGTGACCTTGCATGTGGATGATAGCAATGTTAATGGGGAGGCAATTGAAATGGCTTTGGCTTATCTTTATGGTCATCATCCAAAACTTAATGACAATAATGCATTTCGTGTTCTTGCCGCTGCTTCTTTTCTTGACCTTCAGGATTTGTGTGCGATTTGCACAGACTTCATAATATCTGAACTGTGGACTTCAAACTTCTTAGCTTATCAGGTATTTGCAGAGAGCCAAGATTATGGGATACATGGAGAACGAGTTAGAAATGCTTGCTGGGGCTACCTTTGTCAAAGTGGTGCCATGGAGTTGAAAGAGGTGCTCCCTAAACTTTCCTCTCAAACTTTGCATGCATTGTTGACTTCAGATGAACTGTGGGTACCTAGTGAAGAGAAAAGGTTCGAACTAGCATTATACACACTCCTTGCAAAGGATGCTTTTTGCAAGGCTGAACATCCTGAGCAAGAAAGTTCCACTTCTGAGATGGGGATGGGCACTCATTCGAATTCTTCTAAAGTGAAGGGAAAGAACTTGACTGATAACGGCACTAGTAAAATTTTGGAATCTGAGTTAGGGCATATGAATTTAAAAGATGAACTAGAAGGCCATAATGCTGCTCATAATATTCTGGTTGAGCTTGCTGACGGTGTGGTTGACTTCCAATATGGGGCCAATACAATACAACAAGTTTCATGCACTCAGTCAAATGTGGGGCCAAGATACTCCTGCAGCATGGAACAGACTGCATCATTTAGCAACACATTTTCAGATGGAATTAGATCCTCATGTTCTTATGTTGAAATGCCTATTGCTGTTGGAACTGATGGACTTGGGGCTAATGAAGTGGCTATGGAAGGACCATCTGAAGAAGGTTCATGCTACCTGAATAACAATAATTGGCTTTCTGGGGATCAATCAGCACACTGCTCTTCCATGAACTCTTCCTGTAATGGCCCCATGCCCAGTGAATGGGGAAGATGTGGTCTGCCTCCTTCATGTGGTGACAGAGTTGTGGGCAGAAGACAGGTAAAAGGTCATGATAAAGGGAACTCTGGGGTTTGTAGGGAGGAATATGATGCATTTGCTAATATTTTTGAAGGGGGTTCTCTCTTATATTGCAACATGTCTTTTGAGGCACTTCTGAATGTGAGACGGCAGCTTGAAGAATTGGGATTCCCTTGCAAAGCTGTGAATGATGGTCTTTGGCTGCAGATGCTTCTAAGCCAGCGGGTGCAAGAAATTGGTGCTGACACTTGCAAAAATTGCTTCCAAATGAGTATGGCATGTGCATGCCGGCAACCATTTGGAATTTCACATGGAGTTAGTACTACAGGTTATTACACACAAGAACATGATCAGAATAATCCACCTAACCACATAGGGAATGTATATGTCGCAGAATCTGCTCAGGGGCAGGCAAATAGCCACTTTAGGCCTGTTAGAGTGCATGTTAGAGGAACTGTTGATGGGCTTGCTGGTATTGGACGTGGAACTACATTTGTTTCTGCAGCTGCTTGGCCTCCAACACGTTTTGTCTTCTCCCGTGTACCCTATAGTATGGGCAACAGAAATTGCCAGCAGTCTCTTGTTAATGATGATTTAGAGGCTAGAGCTGACCATAATGGAGATCTATCTGGAGATGGTTTAACAGCTTTAGTTGGGCTTAGCCAAGGAGGGAGCAACATACCCAATGTTCATGTAGAGCAAACAGAGAGAGGGTATGAGACGGACCTGCAGAGCAGATCAAGTGGAGCTTCCATTACAGCACCGAGTACTAGCGGTATTCCTCTGCAGATGCTAGATTCACAAGAGAATGCCATTGGAATCGAGTGGGAGAATGCGAACAATTCTTCTATACCACTGGATATGAAAACACCTTTAAGTCACTTCCCTCCTTTTCGTTTTGGGGTGGAATTTGAGGATGTGCACAGGCTAAGTGATGGCCAAGTCAAGCACTCTCCCGAAGTATTTTATGCTGGTTCTTTATGGAAGGTTAGTGTTCAAGCTTTTAGTGATGAAGACCCTCAAGGACGCAGAACCCTAGGATTATTTCTTCATCGACGGAAGGCAGAGATAACTGATTCTATCAGAAAGGTTCATATGTATGTGGACTCTCGTGAAAAGGTCACTGCTCGTTATCAGTTGATTTGCCCGTCAAAGAGAGATGTGATGGTGTTTGGACGCTTCAAACAAACGGGCATTCCCTTACCAAAAGCTCCCAAAGGTTGGGGCTGGCGCACAGCCTTGTTATTTGATGAGCTTGCAGACCTCCTCCAAAATGGAGCCCTCCGAGTTGCTGCTGTTGTACAGCTTATATGA 2604 0.4524 MQPQYHKPRSYGPPVKMAIPPAQHSDNDRSSGELRALDCNLTSLCDHIQLEGFTSGSFSDIVVHAMGSTYRLHRLILSRSSYFRNMLHGPWKEANASIVTLHVDDSNVNGEAIEMALAYLYGHHPKLNDNNAFRVLAAASFLDLQDLCAICTDFIISELWTSNFLAYQVFAESQDYGIHGERVRNACWGYLCQSGAMELKEVLPKLSSQTLHALLTSDELWVPSEEKRFELALYTLLAKDAFCKAEHPEQESSTSEMGMGTHSNSSKVKGKNLTDNGTSKILESELGHMNLKDELEGHNAAHNILVELADGVVDFQYGANTIQQVSCTQSNVGPRYSCSMEQTASFSNTFSDGIRSSCSYVEMPIAVGTDGLGANEVAMEGPSEEGSCYLNNNNWLSGDQSAHCSSMNSSCNGPMPSEWGRCGLPPSCGDRVVGRRQVKGHDKGNSGVCREEYDAFANIFEGGSLLYCNMSFEALLNVRRQLEELGFPCKAVNDGLWLQMLLSQRVQEIGADTCKNCFQMSMACACRQPFGISHGVSTTGYYTQEHDQNNPPNHIGNVYVAESAQGQANSHFRPVRVHVRGTVDGLAGIGRGTTFVSAAAWPPTRFVFSRVPYSMGNRNCQQSLVNDDLEARADHNGDLSGDGLTALVGLSQGGSNIPNVHVEQTERGYETDLQSRSSGASITAPSTSGIPLQMLDSQENAIGIEWENANNSSIPLDMKTPLSHFPPFRFGVEFEDVHRLSDGQVKHSPEVFYAGSLWKVSVQAFSDEDPQGRRTLGLFLHRRKAEITDSIRKVHMYVDSREKVTARYQLICPSKRDVMVFGRFKQTGIPLPKAPKGWGWRTALLFDELADLLQNGALRVAAVVQLI* 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0345 867 Pfam BTB/POZ domain 54 157 IPR000210 GO:0005515
Vvi5g0345 867 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN 14 866 - -
Vvi5g0345 867 MobiDBLite consensus disorder prediction 1 31 - -
Vvi5g0345 867 Gene3D Potassium Channel Kv1.1; Chain A 30 193 IPR011333 -
Vvi5g0345 867 ProSiteProfiles BTB domain profile. 59 129 IPR000210 GO:0005515
Vvi5g0345 867 MobiDBLite consensus disorder prediction 252 275 - -
Vvi5g0345 867 MobiDBLite consensus disorder prediction 248 275 - -
Vvi5g0345 867 SUPERFAMILY POZ domain 53 157 IPR011333 -
Vvi5g0345 867 SMART BTB_4 59 159 IPR000210 GO:0005515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vvi5g0345 BTB 1.3e-14 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0345 - - vvi:100254500 1778.84