Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0334 ATGCTGGCGAAAGGACTCGTGAGCCTTCCCAGCGAAAGCCTCAGGTTGAGGTGGAAGCAGTCCCAACTCCAAACGCCTTTCGGCTGCCGCTCCATACCATGCCGCTCCCGGAAAAGTAAGGTGATGTTGGTTACAGCTCGTTATTCTCGGAGGCAAATGGATACTCCCGGGGCTTATCAGCTCATTGACGACGAGACCGGAGAAAAATTCATTGTTTGGGGTGGAATCGATGATGACCCCCCAATCCCTTCCAAGGATGTTCTCTCTTGGAATCCCGTTGACAACAACACACCCACTCCTAGTAAGGATGGCCACGCAGCAGTTAAAAAAGATGTTTTTCCAAAGGCACAAACCAAGGGAGTAACTGGAAGTTTCGGAAGATTAAAAGCCCAGAGAGTGAAAGCTCTTACCACAAAGACATCTAAGGCAAAGCGAGAGCTTAATGAATGTGATGATAATGAACTAGAAGTAGAAGGTGCACCCTCCCGAAGATCTATTGGTTCACATTCTGAACTTGAATTCATGGATGAAAAGAAGAAATTGCTCATACATGGAGGAAATGCTTCAAGGGCTTTCAGAAGACGAGAAATCAAGGATGTGATTCAAACAACAGGGGAAATCAAAGATAAGATCCATTCTGATAAAACTGTGAAACGTGACATTGGGAAGTTCTCAGAGCTTCAAATTACACCAGAAAAACCTCACAGATCTGACAACAAAATAGCTGGAGCAGATGTTCTAGTTCCAAGAGTTTCTACTGCTAATTTACAAGGATGGGGTTATGGGGAGACCATGCGTAACTTTGAATTTGAAACGACTAACATTCCAAAGCGACGGGGAAAAGGAAACTCATTGGCTGACAGTGATTTTTTCAGCGGAAAATCCTTTAGAGACCTAGGGTGCAGTGACTATATGATTGAATCCCTAAGGGGTCAGCTTTTTGTACGCCCTTCACATATTCAGGCCATGGCGTTTGCAACTGTTATGGAGGGAAAAAGCTGTATTATAGCTGATCAAAGTGGATCAGGAAAGACATTGGCATATCTTCTCCCAGTAATTCAGCGTCTTAGGGAAGAGGAGCTCCAAGGTCTGGGCAAGTCCTCTGCAGGATGCCCTCAAGTCGTTATACTGGTGCCAACTGCTGAGTTGGCTTCTCAGGTGTTAAGTAATTGCCGATCAATCTCAAAATTTGGGGCTCCATTCCGTTCCATGGCTGCGACAGGTGGTTTTCGACAGAGAACTCAATTGGAAAATCTACAACAGGATTTGGATGTTCTAATTGCAACCCCTGGTCGTTTTATGTTCCTAATTAAAGAAGGCTTCTTGCAGTTAACAAATCTTAGATGTGCCGTGTTGGATGAGGTAGATATACTACTAAATGATGAAGATTTTGAGCTAGCGCTGCAGACTTTAATTAATTCTTCCCCTGTTACCATGCAATATCTCTTTGTGACAGCAACTTTACCAGTAGGCATATATAACAAACTAGTTGAAGTTTTTCCTGACTGTGAAGTGATCATGGGACCTGGTATGCACCGAATAAGCTCCAGACTTGAGGAGGTTCTTGTTGACTGCAGTGGAGATGATGGGACAGAAAAAACTCCTGAATCGGCCTTTCTCAATAAGAAATCTGCTCTTTTGCAGCTTGTGGAGGGAAGTCCAGTTTCCAGAACAATTGTTTTCTGTAACAAGATTGAGACATGTAGAAAGGTTGAAAATGTATTAAAGCATTTTGATAGAAAAGGAGTTCGTTTGCGAGTTTTAGCATTCCACGCTGCATTGACTCAGGAGTCTAGGCTAGCAAATTTGAAGGAGTTCCTCAATTCTCACTCTGAAGGAGTCTCTCTCTTTTTGGTTTGCACTGATAGAGCATCTCGTGGGATCGACTTTGCCAAAGTGGATCATGTTGTACTCTTTGACTTCCCCCGTGATCCAAGCGAATATGTACGACGAGTTGGAAGAACAGCCAGAGGTGCTGGAGGAAAGGGGAAGGCATTTGTGTATGTGGTTGGTAAGCAGGTTTCTCTTGCAAGGAGGATCATAGAAAGAAACAAAAAGGGCCACCCCTTGCACAATGTTCCATCTGCCTATGAGCTCATGAGTTAG 2106 0.4402 MLAKGLVSLPSESLRLRWKQSQLQTPFGCRSIPCRSRKSKVMLVTARYSRRQMDTPGAYQLIDDETGEKFIVWGGIDDDPPIPSKDVLSWNPVDNNTPTPSKDGHAAVKKDVFPKAQTKGVTGSFGRLKAQRVKALTTKTSKAKRELNECDDNELEVEGAPSRRSIGSHSELEFMDEKKKLLIHGGNASRAFRRREIKDVIQTTGEIKDKIHSDKTVKRDIGKFSELQITPEKPHRSDNKIAGADVLVPRVSTANLQGWGYGETMRNFEFETTNIPKRRGKGNSLADSDFFSGKSFRDLGCSDYMIESLRGQLFVRPSHIQAMAFATVMEGKSCIIADQSGSGKTLAYLLPVIQRLREEELQGLGKSSAGCPQVVILVPTAELASQVLSNCRSISKFGAPFRSMAATGGFRQRTQLENLQQDLDVLIATPGRFMFLIKEGFLQLTNLRCAVLDEVDILLNDEDFELALQTLINSSPVTMQYLFVTATLPVGIYNKLVEVFPDCEVIMGPGMHRISSRLEEVLVDCSGDDGTEKTPESAFLNKKSALLQLVEGSPVSRTIVFCNKIETCRKVENVLKHFDRKGVRLRVLAFHAALTQESRLANLKEFLNSHSEGVSLFLVCTDRASRGIDFAKVDHVVLFDFPRDPSEYVRRVGRTARGAGGKGKAFVYVVGKQVSLARRIIERNKKGHPLHNVPSAYELMS* 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0334 701 Pfam Helicase conserved C-terminal domain 542 658 IPR001650 -
Vvi5g0334 701 Pfam DEAD/DEAH box helicase 319 489 IPR011545 GO:0003676|GO:0005524
Vvi5g0334 701 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 545 701 IPR001650 -
Vvi5g0334 701 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 294 322 IPR014014 GO:0003724
Vvi5g0334 701 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 328 669 IPR027417 -
Vvi5g0334 701 SMART helicmild6 573 659 IPR001650 -
Vvi5g0334 701 CDD DEADc 305 494 - -
Vvi5g0334 701 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 182 698 - -
Vvi5g0334 701 Gene3D - 269 505 IPR027417 -
Vvi5g0334 701 SMART ultradead3 313 521 IPR014001 -
Vvi5g0334 701 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 325 506 IPR014001 -
Vvi5g0334 701 CDD SF2_C_DEAD 518 669 - -
Vvi5g0334 701 Gene3D - 532 698 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0334 Vvi-Chr5 2881364 2896450 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0334 295 680 Eukaryotic Initiation Factors Gene Family AT3G19760 26.684 1.00e-27 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0334 K13179 - vvi:100245866 1370.14