Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0332 ATGGACGGGGCAGATGAGAGTGGGAGGCGGCCAGGACTGAGGCTATTGTGGGTTTCTGGCTTGATGGGGTTTCTTCTCTGCAACTGGGTTGATGGGTTTGAGAATTTGAATGTGACTAAACATCAGTTTATGGACGGCTATGGCTTTTCCACCCCTCCATTGATGGTGGGTCTTTCTCTTATTGCCGGAGCTGCTTCCACTGGAGCAGTATGCCTGGATGGAACATTACCTGGTTACCACCTCCACCGGGGATATGGGTCAGGGGCAAATAGTTGGCTCATTCATTTGGAGGGTGGAGGATGGTGCAATACAATTAGAACTTGTGTTTTCCGGAAAAAAACTCCTCATGGTTCATCAACACATATGGAAAAGCTGATACCATTTACAGGAATATTGAGTAACAGAGCTGAAGAAAATCCCGATTTTTATAACTGGAATAGAGTCAAGCTTCGATACTGTGATGGTGCTTCTTTCAGTGGAGACAGTCAAAATGAGGCCAAGACATTGTATTTCCGGGGACAACGCATCTGGTTAGCTGCTATGAAAGATCTGATGTCAAAGGGAATGCACTATGCTAATCAGGCTCTTCTTTCTGGATGCTCAGCTGGGGGCTTAGCAGCTATACTGCACTGTGATGAGTTCAGGGAATTATTTCCAAGAACTACTAGAGTCAAGTGTCTCAGTGATGCAGGGTTATTTCTTGATGTGATTGATGTATCTGGTGGGCGTACTTTAAGGCATATGTTTGGAGGCGTGGTCAGATTACAGCAAGTGGGGAAAATGCTGCCACAGGCTTGTACCAGCCACCTCAATCCAACCTTGTGCTTTTTCCCTCAGAACTTAATTCCCCTGACTAAGACCCCGCTTTTTCTTCTCAATGCAGCTTATGATTCATGGCAGATCCTGGCCAGTTTAGCTCCGCACTCAGCTGATCCCCGTGGCTACTGGCAGAAGTGCAGATTAAATTATGCATATTGCTCTTCATCACAAATTCAAGTTCTCCAAGATTTCAGAAAACAAATGCTAAATGCTGTAAGTGGCTTCTCAGGGTCCAAAAGAAATGGGCTATTCATAAACTCATGTTTTGCTCATTGTCAGACAGAGAGACAGGACACTTGGTTTGCTCATAATTCTCCTCGTATCGGAAACAAGGGCATCGCCCAATCTGTGGGGGACTGGTATTTTGATCGAGCTGAAGTCAAGAGTATTGATTGTCCTTATCCTTGTGACAAGACCTGCCACAATCTGGTCTTCCGCCAAAGTTTTTAG 1269 0.4539 MDGADESGRRPGLRLLWVSGLMGFLLCNWVDGFENLNVTKHQFMDGYGFSTPPLMVGLSLIAGAASTGAVCLDGTLPGYHLHRGYGSGANSWLIHLEGGGWCNTIRTCVFRKKTPHGSSTHMEKLIPFTGILSNRAEENPDFYNWNRVKLRYCDGASFSGDSQNEAKTLYFRGQRIWLAAMKDLMSKGMHYANQALLSGCSAGGLAAILHCDEFRELFPRTTRVKCLSDAGLFLDVIDVSGGRTLRHMFGGVVRLQQVGKMLPQACTSHLNPTLCFFPQNLIPLTKTPLFLLNAAYDSWQILASLAPHSADPRGYWQKCRLNYAYCSSSQIQVLQDFRKQMLNAVSGFSGSKRNGLFINSCFAHCQTERQDTWFAHNSPRIGNKGIAQSVGDWYFDRAEVKSIDCPYPCDKTCHNLVFRQSF* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0332 422 Pfam Pectinacetylesterase 53 399 IPR004963 GO:0016787
Vvi5g0332 422 PANTHER NOTUM-RELATED 54 415 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0332 Vvi-Chr5 2869595 2876071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0332 21 420 Carbohydrate Esterase AT1G57590 68.500 0.0 575
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0332 K19882 - vvi:100251007 893.649