Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0331 ATGGGGAAGCACTCTTGCTGTTACAAGCAGAAGCTAAAGAGAGGCCTGTGGTCTCCAGAAGAAGATGAGAAGCTTTTCAGGTATATCACGGAGCATGGACATGGGTGCTGGAGCTCTGTCCCTAAACAAGCAGGTTTGCAAAGGTGTGGCAAGAGTTGCAGGCTAAGGTGGATTAACTATTTGAGGCCTGATTTGAAGAGGGGCGCCTTCACAGGACAGGAAGAGAAGCTTATAGTTGAACTGCATGAAATTCTTGGCAACAGGTGGTCTCAGATTGCTTCCCACTTACCGGGAAGAACAGACAATGAAATTAAAAACCAGTGGAACTCTAGCATTAAGAAGAAACTCAGGCAGAAAGGCATCGACCCAAACACCCACAAGCCACTTTCTGAAATTGACAACCGACCAACGGCCAATAATTCCTCCATGGAGCTGGAGCTAGAGCTAGAGCCACTACTAAACAATGAGGAAAGCCTCACTACCATTTTTTGCAGGCCTGGGGAGGTGACAGGACGGTTGAATTATGAGTCTAATCCCCACTTTCCATTTGATCTGCATCCCGGATCATGGTTAAGCCAAAACAGCATCTCTTCCCAGCTCAACTCCCAATTCCATTCCACCTCCATTTCTACTTTTCTCCAAACTGATTTTAGCTCAACTGGGTCAGTTCTGCCTCTACAATCTCCCAGAGGAATCCAGTATGCTTCTGCTAGCTCCAGCAGCAGCCAATTCTCTTGGGGACTGGCCGATTGGGGATTATCAGATCAAGAAGGCAAATTGGGAGATAACAAACAGTTGGAGCATCTCAGCACACCTTCTTGTACACCACCTGATTCACAAAATCAAGCAGCTCATCCTCATTCCATCCCAGATACAGCTTGGGCCGACTGCTGA 894 0.4732 MGKHSCCYKQKLKRGLWSPEEDEKLFRYITEHGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGAFTGQEEKLIVELHEILGNRWSQIASHLPGRTDNEIKNQWNSSIKKKLRQKGIDPNTHKPLSEIDNRPTANNSSMELELELEPLLNNEESLTTIFCRPGEVTGRLNYESNPHFPFDLHPGSWLSQNSISSQLNSQFHSTSISTFLQTDFSSTGSVLPLQSPRGIQYASASSSSSQFSWGLADWGLSDQEGKLGDNKQLEHLSTPSCTPPDSQNQAAHPHSIPDTAWADC* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0331 297 MobiDBLite consensus disorder prediction 266 287 - -
Vvi5g0331 297 Gene3D - 11 67 - -
Vvi5g0331 297 MobiDBLite consensus disorder prediction 266 297 - -
Vvi5g0331 297 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vvi5g0331 297 PANTHER MYB DOMAIN PROTEIN 55 1 229 - -
Vvi5g0331 297 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vvi5g0331 297 Gene3D - 68 141 - -
Vvi5g0331 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Vvi5g0331 297 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vvi5g0331 297 MobiDBLite consensus disorder prediction 116 139 - -
Vvi5g0331 297 CDD SANT 17 61 IPR001005 -
Vvi5g0331 297 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vvi5g0331 297 Pfam Myb-like DNA-binding domain 67 109 IPR001005 -
Vvi5g0331 297 FunFam Myb transcription factor 11 67 - -
Vvi5g0331 297 FunFam MYB transcription factor 68 129 - -
Vvi5g0331 297 SMART sant 66 114 IPR001005 -
Vvi5g0331 297 SMART sant 13 63 IPR001005 -
Vvi5g0331 297 CDD SANT 69 109 IPR001005 -
Vvi5g0331 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0331 Vvi-Chr5 2867261 2868320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0331 1 178 MYB Transcription Factor Family AT1G09540 64.894 2.60e-83 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi5g0331 Myb_DNA-binding 8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0331 K09422 - vvi:100256165 595.504