Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0328 ATGGGAGGAGGTGCAGCAACCCCACATTCATCGTCATCATCATCATCTTCTTCTTCATCATCCATAGATAGCATTAGCAACAACCATCCTTCTCTTTCCTCTGCTTCTTCTTCCATTTCCCTCCCACCAAACACGAAAAGATCAGGTTTGAGCACTGATCTAAGGCTCGGTCCTAGCATCTCGACCGCCCACATTCATCACTGCTCCTCCAGTGCCCCCAGTCCAAGGGACCAACGTGTTGACTGGCCGCCAATCAAGCCGTTGTTGAGGAGCACACTCACAGGGAAAGCAGATAACCAGCGCCAAGCCACTAACTTATTCGTAAAGGTTTACATGGAAGGCATTTCAATCGGACGGAAACTGGATCTGTTTGCCTACAGTGGTTACGATGGCTTAGTGGCAACCCTTAGCCATATGTTCAAAACCACCATCTTTTGCTCTGATCCTCATGTTGGTGGCGCTGATCATTCCGGAAAATATCATATCTTGACTTATGAAGACAAGGAAGGGGACTGGATGATGGTCGGAGATGTTCCTTGGGAGATGTTCTTAACCACTGTGAAGAGGCTGAAGATCACAAGAGCTGACAGATGCTAG 597 0.4807 MGGGAATPHSSSSSSSSSSSSIDSISNNHPSLSSASSSISLPPNTKRSGLSTDLRLGPSISTAHIHHCSSSAPSPRDQRVDWPPIKPLLRSTLTGKADNQRQATNLFVKVYMEGISIGRKLDLFAYSGYDGLVATLSHMFKTTIFCSDPHVGGADHSGKYHILTYEDKEGDWMMVGDVPWEMFLTTVKRLKITRADRC* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0328 198 MobiDBLite consensus disorder prediction 1 53 - -
Vvi5g0328 198 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 51 196 IPR003311 GO:0005634|GO:0006355
Vvi5g0328 198 Pfam AUX/IAA family 43 194 IPR033389 -
Vvi5g0328 198 Gene3D - 99 198 - -
Vvi5g0328 198 ProSiteProfiles PB1 domain profile. 105 197 IPR000270 GO:0005515
Vvi5g0328 198 SUPERFAMILY CAD & PB1 domains 100 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0328 Vvi-Chr5 2845731 2846772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0328 99 192 B3 DNA Binding Superfamily AT1G19220 38.298 2.46e-12 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vvi5g0328 AUX_IAA 2.7e-35 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0328 K14484 - vvi:100244346 363.614