Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0326 ATGGCGAGGAAGAAGGTCCAGCTCCAGTGGATAATGGATGACACAGCCAGGAGGACGACTTATAAGAAAAGAGTGAAGGGTCTGATGAAGAAGGTGAAGGAACTGAGTATCCTATGTGGGATTGAGGCCTGCGCTGTTGTCTACAGTCCGTATGATCCGCAGCCGGAGGTTTGGCCCTCTCCAATGGAGGCGGTACGGGTGATTGGGGAGTTCAAGTGCAGGCCGGAAAACGACCAGACCAAGAAGAGGTTCAACCAAGAAAACTATATCAGGCAGAGGGTGGCAAAAGCTAAGGACCAGGTGGTGAAACAGCAGAAGAAAAATAGGAGAACGGAGATGGAAAACCTCATGTACCAGTGCCAGGCTGGGGGCAAGGGGTTGCAGGACTTGAACATCAAAGATTCTAGCGATTTGATGTGGTCTATTGATGATCGGTTGAAGGCAGTGGGCCAGAAGATGGAGTACTTCCATCATCCGGCACCCCAACCAAGCGGTGCTGCTGCTCCGGCTGCAGTTCCCGTGGCCCAAAAGACACCTCTAGAGGTGGCTCTTGAGTCACTTGAGAATCAAATGCTAATGGACTTAACTCCCAGGCCTACGGACAGTCTGGTCACTGATATGGCGAGGAAGAAGGTCCAGCTCCAATGGATAATGAATGACACAGCGAGGAGGACGACTTATAAGAAAAGAATGAAGGGTCTGATGAAGAAGGTGAAGGAACTGAGTATCCTATGTGGGATTGAGGCGTGCGCCATCGTCCACAGTCCCTATGATCCGCAGCCGGAAGTTTGGCCGCCTCCAATGGAGACAGTACGGATGATTAGGGAGTTCAAGTGCAGGCCAGAGAACGACCAGAGCAAGAAGAGGTTAAACCAAGAAAACTATATGAGGCAGAGGGTGGCCAAAGCTAAGGACCAGCTGGAAAAACAGCAGAAGAAGAACAGGAGAATAGAGATGGAAAACCTCATGTACCAGTGCCAGGCTGGGGAGAAGGGGTTGCAGGACATGAGCATCAAAGATTCTAGCGATTTGATGTGGTCCATTGATGATCAGTTGAAGGCAGTGGGCCAGAAGATGGAGTATTTCCATCATCAGGCACCCCAACCAGGCGGTGCTGCTGCTCAGGCTGCAGTTCCCGTGGCCCAGAAGACACCTCTAGAGGTGGCTCTTGAGTCACTTGAGAATCAAATGCTAATGGACGTAGCTCCCAGGGGTCCGGACAGTTTGGTCACTGTGGGGTACCCAGGAAGCCAAGATATGATGCATCCTGGTCCTCACGGACATTATGAGGACCCCAGTTTCTGGGGGCCTCCCTTCTTCACTTGA 1326 0.5166 MARKKVQLQWIMDDTARRTTYKKRVKGLMKKVKELSILCGIEACAVVYSPYDPQPEVWPSPMEAVRVIGEFKCRPENDQTKKRFNQENYIRQRVAKAKDQVVKQQKKNRRTEMENLMYQCQAGGKGLQDLNIKDSSDLMWSIDDRLKAVGQKMEYFHHPAPQPSGAAAPAAVPVAQKTPLEVALESLENQMLMDLTPRPTDSLVTDMARKKVQLQWIMNDTARRTTYKKRMKGLMKKVKELSILCGIEACAIVHSPYDPQPEVWPPPMETVRMIREFKCRPENDQSKKRLNQENYMRQRVAKAKDQLEKQQKKNRRIEMENLMYQCQAGEKGLQDMSIKDSSDLMWSIDDQLKAVGQKMEYFHHQAPQPGGAAAQAAVPVAQKTPLEVALESLENQMLMDVAPRGPDSLVTVGYPGSQDMMHPGPHGHYEDPSFWGPPFFT* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0326 441 CDD MADS_SRF_like 2 83 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vvi5g0326 441 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Vvi5g0326 441 SUPERFAMILY SRF-like 1 82 IPR036879 GO:0003677|GO:0046983
Vvi5g0326 441 Coils Coil 293 320 - -
Vvi5g0326 441 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 217 256 IPR002100 GO:0003677|GO:0046983
Vvi5g0326 441 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Vvi5g0326 441 FunFam Agamous-like MADS-box protein AGL80 13 98 - -
Vvi5g0326 441 FunFam Agamous-like MADS-box protein AGL80 219 304 - -
Vvi5g0326 441 CDD MADS_SRF_like 208 291 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vvi5g0326 441 Gene3D - 219 319 IPR036879 GO:0003677|GO:0046983
Vvi5g0326 441 Gene3D - 13 116 IPR036879 GO:0003677|GO:0046983
Vvi5g0326 441 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi5g0326 441 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi5g0326 441 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi5g0326 441 Coils Coil 94 114 - -
Vvi5g0326 441 SUPERFAMILY SRF-like 207 287 IPR036879 GO:0003677|GO:0046983
Vvi5g0326 441 ProSiteProfiles MADS-box domain profile. 207 255 IPR002100 GO:0003677|GO:0046983
Vvi5g0326 441 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi5g0326 441 SMART madsneu2 207 266 IPR002100 GO:0003677|GO:0046983
Vvi5g0326 441 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0326 Vvi-Chr5 2828896 2835637 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0326 207 386 Type I MADS-box Gene Family AT5G48670 43.889 7.97e-43 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vvi5g0326 SRF-TF 3.7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0326 - - vvi:100259721 454.907