Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0324 ATGGCGAGGAAGAAGTTCAAACTCCAATGGATAATGAATGACACAGCCAGGAGGACAACGTATAAGAAAAGAGGGACGGGTCTGATGAAGAAGGTGAAGGAACTGAGTATCCTATGTGGCGTTGAGGCGTGCACCATCGTCTACAGTCCGTATGATCCGCAGCCAGAGGTTTGGCCATCTCCAATGGAGGCTGTTAGGGTGGTTGGAGAGTTCAAGAGCAGGACAGAGAATGACCAGACCAAGAAGGGGTTAAAACAAGAAAACTATACCAGGCAGAGGGTGGCAAAAGCTAAGGACCAGCTGGCAGTCGGCCACAAGATGGAGTACTTCCATCATCGGTTACCCCAACCAGGCGGTGCTGCTGCTCCAGCTGCAGTTCCCGTGGCCCAAAAGACTCTGGCTCTTGAGTCACTTGAAAATCAAATGCTAATGGACATAGCTCCCAGGCCTCCGGACAGTCTGGTCACTGTGGCGTACCCAGGAGTCCAAGATATGATGCATCCTGCTCCTTACGGTCATTATGAGGACCCCAGTTTCTGGGGGCCTCCCTTCTTCGCTTGA 561 0.5205 MARKKFKLQWIMNDTARRTTYKKRGTGLMKKVKELSILCGVEACTIVYSPYDPQPEVWPSPMEAVRVVGEFKSRTENDQTKKGLKQENYTRQRVAKAKDQLAVGHKMEYFHHRLPQPGGAAAPAAVPVAQKTLALESLENQMLMDIAPRPPDSLVTVAYPGVQDMMHPAPYGHYEDPSFWGPPFFA* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0324 186 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 104 - -
Vvi5g0324 186 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Vvi5g0324 186 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Vvi5g0324 186 CDD MADS_SRF_like 2 80 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vvi5g0324 186 FunFam Agamous-like MADS-box protein AGL80 13 98 - -
Vvi5g0324 186 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Vvi5g0324 186 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi5g0324 186 SUPERFAMILY SRF-like 3 94 IPR036879 GO:0003677|GO:0046983
Vvi5g0324 186 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi5g0324 186 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi5g0324 186 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0324 Vvi-Chr5 2823195 2823892 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0324 1 97 Type I MADS-box Gene Family AT3G05860 45.361 5.22e-29 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vvi5g0324 SRF-TF 1.9e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0324 - - vvi:100249499 294.664