Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0323 ATGGCAAGGAAGAAGGTCCAGCTCCAATGGATAATGAATGACACAACTAGGAGGACAACGTACAAGAAAAGAGTAAAGGGTCTGATGAAGAAGGCGAAGGAACTGAGTATCCTATGTGGGGTTGAGGCCTGCGCCATCGTCTACAGTCCGTATGATCCGCAGCCAGAGGTTTGGCCATCTCCGATGGAGGTGGTACGGGTGATTGGGGAGTTCGAGTGTAGGCCAGAGAACGACCAGACCAAGAAGAGGTTAAACCAAGAAAACTACATCCGCCAGAGGGTGGCAAAAGCCAAGGAACAAGTGGTGAAACAACAGAAGAAGAACAGGAGAATGGAGTTGGACAACCTCATGTACCAGTGCTTGGCTGGGGGTAGGGGGTTGCAGGGCTTAAACATCAAAGAGCTTAGCGATTTGATGTGGTACATCGATGATCAGCTGAAGCCAATCAGCCACAAGATGGAGTACTCCCACCATCCGGCACCCCAACCAGGTGGTGCTGTCGCTCTGACTGCTGTTCCGGTTGCCCAAAAGACACCTCTAGAGGTGGCACTTGAGTCACTGGAAAATCAGATCCTAATGGACACAGCTCCACAGCCTCGAGACGGTGTGGTCACTGTGGCCCACACAGAAGGGCAAGACATGATGCTTCCCGTTCCTCATGATAATTATGAGGACCCCAGTTTCTGGGGCGCCCCATTCTTCCCTTGA 708 0.5184 MARKKVQLQWIMNDTTRRTTYKKRVKGLMKKAKELSILCGVEACAIVYSPYDPQPEVWPSPMEVVRVIGEFECRPENDQTKKRLNQENYIRQRVAKAKEQVVKQQKKNRRMELDNLMYQCLAGGRGLQGLNIKELSDLMWYIDDQLKPISHKMEYSHHPAPQPGGAVALTAVPVAQKTPLEVALESLENQILMDTAPQPRDGVVTVAHTEGQDMMLPVPHDNYEDPSFWGAPFFP* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0323 235 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Vvi5g0323 235 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi5g0323 235 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi5g0323 235 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi5g0323 235 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi5g0323 235 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 154 - -
Vvi5g0323 235 Gene3D - 13 112 IPR036879 GO:0003677|GO:0046983
Vvi5g0323 235 Coils Coil 94 114 - -
Vvi5g0323 235 SUPERFAMILY SRF-like 3 94 IPR036879 GO:0003677|GO:0046983
Vvi5g0323 235 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vvi5g0323 235 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Vvi5g0323 235 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0323 Vvi-Chr5 2819956 2820663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0323 1 180 Type I MADS-box Gene Family AT5G48670 45.000 9.14e-47 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vvi5g0323 SRF-TF 5.6e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0323 - - vvi:100247756 474.552