Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0312 ATGGAAACGGAAGATTGGGATTTGAGTGCGGAGGAACTTGATTCACTCGAACGAGACGCTTTCAGACAGATTGCTCTCCGCAATTCTTCTTCTTCCACCGCTTCCGTTTCCAATAACTCCATTCACTCCTCCAACCCCAACCCCAACCCCATCATTCCTTCTCTTCCCCGCAAGGTAGATGATTTGCCCCCTGGGTCCAGAATACCACCCCCATCTACAGTAGTCAGTAACTGCTCAAAGGAACTCCACAAGCTCTCTGTCAAGTTTTTTCTTCATGCTAGTGGAAATATTGCTGCAAAATTTTCATACGACCCGGTAGTTGTGGGTGCGTTCCGAAAGATATCCAAAGCCAGTTGGAATGCAAAAGAAAGATTATGGATGTTCCCTTTATCTTCTTTGTCGTCAGCTGAAAAGGTTCTCCATGAAATAACCGGTATCAATGTTGAGATAGAGAACATAGATCCCTTGGTGCGGCGAGCGATTGATGCTGCTACAGCTGTTCCAGATCTTCGAGATCGATATGATAGGATCCCAAGTTACATCGAAACAAAGCTTCTGCCATTCCAGCGTGATGGTATTAGGTTTGTATTGCAGCATGGAGGTCGTGTCCTTCTAGCAGATGAGATGGGACTGGGAAAGACCCTACAGGCCATTGCTGTAACAACTTGCGTTCGTGACTCATGGCCTGTTCTTGTTCTTACCCCTTCTTCTTTACGTTTGCATTGGGCTTCTATGATCCAACAATGGTTGAATATCCCATCATCAGATATCCTTGTAGTTTTATCTCAGTGGAGTGGATCTAACAGGGGTGGATTCAGAATTGTACCCTCAAACACGAAGGGCACTATTCATCTGGATGGTGTGTTCAACATTATCTCCTACGATGTTGTCCTTAAGTTACAGAAAATACTAGCAGAATCAGAGTTTAAGGTTGTGATTGCAGATGAGTCACACTTCTTGAAGAATGCTCAAGCAAAGAGAACAAGTGCTTCCCTTCCAGTTTTACAGAAAGCTCAATACACAATTTTGCTCAGTGGAACTCCTGCTTTATCACGGCCGATTGAGCTATTCAAGCAGCTTGAAGCCTTGTATCCGGATGTATATAGGAATGTTCACGAATATGGTAATCGATATTGCAAGGGTGGTGTATTTGGAATGTATCAAGGTGCAAGTAACCATGAAGAATTGCACAACCTGATGAAAGCAACTGTGTTGATCCGCAGGCTTAAAAAAGATGTACTGTCTGAGCTTCCTGTGAAACGCAGGCAACAGGTCTTCCTAGATTTGGATGAAAAGGACATGAAACAAATCAACGCTTTATTTCGTGAGTTGGAGGTGGTAAAAAGCAAAATCAAGGCCAGCAAATCCAAAGAGGAGGCTGAATCACTAAAATTTTCTGAGAAAAATCTTATTAATAAGATATATACCGACTCTGCACAAGCCAAGATTCCAGCAGTCCTAGATTACCTGGGAACTGTTGTTGAGGCAGGCTGCAAGTTTCTAATATTTGCACACCATCAGCCGATGATTGATTCAATCTTCCAGTTTCTTGTGAAGAAAAAGGTTGGTTGCATTCGAATTGATGGCAGTACTCCTTCATCATCAAGGCAGGCTTTTGTTACAGATTTTCAGGAAAAAGATACTATTAAGGCAGCAGTGCTATCTATCAAAGCTGGAGGTGTTGGGTTAACTTTGACAGCTGCAAGCACAGTTATTTTTGCAGAATTGTCTTGGACTCCAGGCGACTTAATTCAAGCAGAAGACCGTGTCCATAGGATTGGCCAGGTGTCATCGGTTAATATACACTACCTGCTAGCAAATGACACAGTCGATGACATAATATGGGATGTTGTCCAGAGCAAGTTGGAAAATCTGGGACAGATGCTTGATGGCCACGAAAATACCTTGGAAGTTTCAGTCAGCCAGCCAAGAAGTAGCCCTTCAAAGCAGAGAACAATAGACTCTTTCATGAAGCGCTGTAACAATGTGGACAACCCAGAGCATCAGCCCAATCTCAAACACCCCAGAAACTGA 2034 0.4341 METEDWDLSAEELDSLERDAFRQIALRNSSSSTASVSNNSIHSSNPNPNPIIPSLPRKVDDLPPGSRIPPPSTVVSNCSKELHKLSVKFFLHASGNIAAKFSYDPVVVGAFRKISKASWNAKERLWMFPLSSLSSAEKVLHEITGINVEIENIDPLVRRAIDAATAVPDLRDRYDRIPSYIETKLLPFQRDGIRFVLQHGGRVLLADEMGLGKTLQAIAVTTCVRDSWPVLVLTPSSLRLHWASMIQQWLNIPSSDILVVLSQWSGSNRGGFRIVPSNTKGTIHLDGVFNIISYDVVLKLQKILAESEFKVVIADESHFLKNAQAKRTSASLPVLQKAQYTILLSGTPALSRPIELFKQLEALYPDVYRNVHEYGNRYCKGGVFGMYQGASNHEELHNLMKATVLIRRLKKDVLSELPVKRRQQVFLDLDEKDMKQINALFRELEVVKSKIKASKSKEEAESLKFSEKNLINKIYTDSAQAKIPAVLDYLGTVVEAGCKFLIFAHHQPMIDSIFQFLVKKKVGCIRIDGSTPSSSRQAFVTDFQEKDTIKAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRVHRIGQVSSVNIHYLLANDTVDDIIWDVVQSKLENLGQMLDGHENTLEVSVSQPRSSPSKQRTIDSFMKRCNNVDNPEHQPNLKHPRN* 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0312 677 CDD SF2_C_SNF 481 605 - -
Vvi5g0312 677 MobiDBLite consensus disorder prediction 29 48 - -
Vvi5g0312 677 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 486 637 IPR001650 -
Vvi5g0312 677 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 3 665 - -
Vvi5g0312 677 Gene3D - 442 669 IPR027417 -
Vvi5g0312 677 FunFam Chromatin remodeling factor18 158 432 - -
Vvi5g0312 677 SMART helicmild6 511 594 IPR001650 -
Vvi5g0312 677 MobiDBLite consensus disorder prediction 29 72 - -
Vvi5g0312 677 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 307 636 IPR027417 -
Vvi5g0312 677 Pfam Helicase conserved C-terminal domain 485 594 IPR001650 -
Vvi5g0312 677 Gene3D - 159 432 IPR038718 -
Vvi5g0312 677 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 194 366 IPR014001 -
Vvi5g0312 677 CDD DEXHc_HARP_SMARCAL1 185 408 - -
Vvi5g0312 677 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 408 IPR027417 -
Vvi5g0312 677 FunFam Chromatin remodeling factor18 443 673 - -
Vvi5g0312 677 ProSiteProfiles HARP domain profile. 81 155 IPR010003 -
Vvi5g0312 677 Pfam SNF2-related domain 204 462 IPR000330 GO:0005524|GO:0140658
Vvi5g0312 677 SMART ultradead3 181 374 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0312 Vvi-Chr5 2751554 2771033 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0312 446 625 RAD5 or RAD16-like Gene Family AT1G02670 32.065 1.79e-18 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vvi5g0312 SNF2_N 1.9e-28 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0312 K14440 - vvi:100264852 1279.62