Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0308 ATGGCTGTGGAGAATAGTTTGGATGGAGATATATACACACAGCAGACTAGAGCATCAACAAGGCAAACACCAGCCGTGGAGACAGTAAAAATCCCCGAAAATGCTGGCAACCGACAAGATTCAGAAAAGAGGAAGGCAACACAGGGAATCAGTACTAGTACAGTACCATTTTACAAGCTATTCTCCTTTGCTGACTCATGGGATTATCTACTAATGCTAGTGGGCACAGTCACTGCTGTTGGAAATGGTATGTGCTTGCCTGCAGTAGCCCTACTCTTTGGTGAATTAATGGACGCATTCGGAAAAACTGTCAACACCAATAATATGCTGCATGAAGTTTCCAAGCTCTGTCTGAAGTTTGTGTATTTGTCCTCAGGAGCAGCTGTTGCCTCATTTTTCCAGGTGACTTGCTGGATGGTAACAGGAGAGAGACAGGCCACAAGAATAAGAAGTTTGTACTTGAAAACGATATTGAGGCAAGATATTGCCTTCTTTGATAAAGAAACCAAAACTGGAGAAGTCGTTGGGAGGATGTCAGGTGACACTGTTCTTATTCAAGATGCCATGGGTGAGAAGGTTGGGATGGTTATTCAGCTGGCAGCTACATTTATAGGAGGCTTCTTTGTAGCTTTTTTCAAGGGGTGGATTCTTGTCCTTGTCCTGTTATCTTGTATTCCACCTCTTGTTGCATCTAGTGCTGTCATGACCATTCTTTTAGCGAAGCTGGCCTCCCAGGAACAAACTTCTTATTCAGTAGCAGCAAGTGTAGTAGAGCAGACTATTGGATCAATAAGAACTGTTATCTCCTTTACAGGGGAGAAGCAAGCTATAGCTAAATACAAGAAGTCTCTAACCAAAGCTTATGATTCTGCAGTGAGGGAGGGCTTGGCTACTGGGTTAGGTCTTGGTTCTGTTATGTTTATTGTATTTTGCATTTTCGCTTTAGCTGTATGGTTTGGCGCGAAGCTGATAATCAACAAAGGATACTCAGGAGGGAATGTCGTTGGGGTGATTGTTGCTGTGTTGACTGCTTCCATGTCTCTAGGGCAGACATCTCCATGCATTAAAGCATTTGCAGCAGGACAAGCTGCAGCATTTAAGATGTTTGAGACAATCAATAGGAAGCCAGAGATAGATGCTTATGACACCAAGGGACTGAAATTGGATGATATTAGTGGAGATGTCGAATTAAGGGATGTTTATTTCAGTTATCCAGCAAGACCAGATGAACAAATTTTCAGTGGATTCTCTATCTCAATACCTAGTGGTACAACAACAGCTTTGGTTGGTCAGAGTGGAAGTGGGAAATCAACAGTCATCAGTTTAGTAGAGAGATTCTATGATCCTCAAGCTGGTGAAGTTCTTATAGATGGGATTAATCTCAAGGATTTTCAACTGAGATGGATCAGGCAGAAAATAGGCCTTGTCAACCAGGAACCTGTATTGTTTGCTTCTAGCATTAAAGATAATATTGCCTATGGGAAGGATGATGCCACCATTGAAGAAATTAGAGCTGCTGCTGAGCTCGCCAATGCTGCTAAATTTATTCATAAACTGCCTCAGGGCTTAGACACAATGGTTGGCGAGCATGGAATGCATCTATCTGGAGGCCAAAAGCAGCGCGTTGCTATAGCCAGAGCAATCCTGAAAGACCCGAGAATTCTCCTGCTGGATGAAGCTACAAGTGCTCTTGATTTGGGATCTGAGAGGATTGTGCAAGAGGCATTGGACAGGGTCATGATGAACAGAACTACTATCATTGTTGCACATCGCTTGAGTACAGTGAGGAATGCAGATATGATTGCAGTCATTCATCAAGGAAAGATTGTTGAAAAAGGTTCACACACTGAGCTACTCAGGGATCCTCATGGGGCATATCACCAGCTTGTACAGTTGCAAGAAATTAGCAGTGAGTCAGAACAACATGATGAAAGTTGGGAATCATTTGGCGCTAGACACCATAACCGTTTCCCATTCCCATTTTCATTTGGTGTATCTCCTGGAATCAATATGCTGGAAACAGCACCTGCAAAGCCCAACTCAGAACCATTAAAACATCCAACAGAAGGTCTAGTTTGGCGCTTGGCCTGTCTTAACAAGCCAGAAATCCCAGTCTTACTGCTAGGTATTGTAGCTGCAATTGCCAACGGCTTAATATTACCCGCGTTTGCAGTACTATTTTCCACTATAATCGACAATTTCTATGAGTCAGCAGATAAACTCCGGAAGGAGTCTAAGTTTTGGGCGTTAATGTTTTTCATTCTTGGTGTGGCATCCTTGTTGATAACCCCGACAAGGACCTACCTCTTTGCTGTTGCTGGGTGTAAGTTAATTAAAAGGATCCGATCCATGTGCTTTGAGAAAGTTGTTCACATGGAGGTAGGCTGGTTCGACAAAGCCGAGAACTCGAGCGGTGCCATTGGAGGGAGGCTGTCTGCAGATGCAGCTTCAGTACGAAGTCTGGTTGGAGATGCGCTTGCTTTGGTGGTTCAGAACATTGCAACAGTAATTGCTGGCTTGGCTGCTGCTTTTGAAGCAAACTGGCTGTTGGCTCTCATTATCCTTGTTTTCCTACCTCTAATAGGAATCAATGGATGTATTCAGCTGCAATTCACAAAGGGTTTCAGCGGAGATGCCAAGAAAAGGTATGAGGAAGCAAGTCAAGTAGCCAACGAGGCAGTTGGGAATATTAGAACAGTAGCTTCTTTCTGTGCTGAAGAGAAGGTGATGCAGCTGTACCAGAAGAAATGTGAAGGCCCAGCAAAGACAGGGATGACACGAGGCTTGATCAGTGGGTTAGGCTTTGGGCTATCATTCTTCTTTGTTTATTTTATCTATGCAGTCACTTTTTATGCTGGAGCCCGTCTTTTTCGAGACGGGAAGACAACATTCTCAAAGATCTTAAGAGTGTTCTTTGCTCTCAGTATGGTGGGCCTAGGCGTCTCTCAGTCTGGCTCTTATGCCCCTGATGCCAGTAAAGCTAAAAGTTGTGCTGCTTCAATATTTGCAATTCTTGACCAGATATCAGAAATAGACTCTAGTGGCAGGTCAGGAAAGAGACTAAAAAATGTAAAGGGAGACATCAAGTTTCGGCATGTCAGTTTCAGGTATCCCACTAGGCCTGAAATCCAAATTTTCCGGGATCTTTGCCTGACTATTCGCTCTGGCAAGACAGTTGCCCTGGTTGGAGAAAGTGGGTGTGGAAAATCCACTGTGATCTCATTACTGCAGAGATTTTATGATCCTGATTCAGGTCGTATAACACTGGATGGGGCCGACATCCAAAAGCTGCAGCTGAGATGGCTGAGGCAGCAGATGGGTCTGGTGAGCCAGGAACCAACGTTATTCAATGACACCATCCGAGCCAATATTGGATATGGAAAAGAAGGAAATGCAACAGAGGCAGAAATCATAGCTGCAGCAGAATTAGCCAATGCCCACCACTTCATTAGTAGTTTACAGCAGGGGTATGATACAGCAGTAGGTGAACGTGGGGTGCAATTGTCTGGAGGACAGAAGCAAAGAGTGGCCATTGCCAGGGCTGTGGTAAAGGGCCCAAAGATACTGCTACTAGATGAAGCCACCAGTGCCCTTGACGCTGAATCTGAACGGGTGGTTCAAGATGCCCTGGACAGAATCATGGTGGGGAAAACCACATTGGTGGTAGCCCACCGGCTGTCCACGATCAAGGGAGCTGATTTGATTGCAGTGGTCAAGAATGGGTTGATTGCAGAAAAAGGAAATCATGAAAGTTTGATGAATATTAAGAATGGTCGTTATGCCTCCTTGGTTGCACTACATGCCACTGCTTCATCTCAGTGA 3822 0.4445 MAVENSLDGDIYTQQTRASTRQTPAVETVKIPENAGNRQDSEKRKATQGISTSTVPFYKLFSFADSWDYLLMLVGTVTAVGNGMCLPAVALLFGELMDAFGKTVNTNNMLHEVSKLCLKFVYLSSGAAVASFFQVTCWMVTGERQATRIRSLYLKTILRQDIAFFDKETKTGEVVGRMSGDTVLIQDAMGEKVGMVIQLAATFIGGFFVAFFKGWILVLVLLSCIPPLVASSAVMTILLAKLASQEQTSYSVAASVVEQTIGSIRTVISFTGEKQAIAKYKKSLTKAYDSAVREGLATGLGLGSVMFIVFCIFALAVWFGAKLIINKGYSGGNVVGVIVAVLTASMSLGQTSPCIKAFAAGQAAAFKMFETINRKPEIDAYDTKGLKLDDISGDVELRDVYFSYPARPDEQIFSGFSISIPSGTTTALVGQSGSGKSTVISLVERFYDPQAGEVLIDGINLKDFQLRWIRQKIGLVNQEPVLFASSIKDNIAYGKDDATIEEIRAAAELANAAKFIHKLPQGLDTMVGEHGMHLSGGQKQRVAIARAILKDPRILLLDEATSALDLGSERIVQEALDRVMMNRTTIIVAHRLSTVRNADMIAVIHQGKIVEKGSHTELLRDPHGAYHQLVQLQEISSESEQHDESWESFGARHHNRFPFPFSFGVSPGINMLETAPAKPNSEPLKHPTEGLVWRLACLNKPEIPVLLLGIVAAIANGLILPAFAVLFSTIIDNFYESADKLRKESKFWALMFFILGVASLLITPTRTYLFAVAGCKLIKRIRSMCFEKVVHMEVGWFDKAENSSGAIGGRLSADAASVRSLVGDALALVVQNIATVIAGLAAAFEANWLLALIILVFLPLIGINGCIQLQFTKGFSGDAKKRYEEASQVANEAVGNIRTVASFCAEEKVMQLYQKKCEGPAKTGMTRGLISGLGFGLSFFFVYFIYAVTFYAGARLFRDGKTTFSKILRVFFALSMVGLGVSQSGSYAPDASKAKSCAASIFAILDQISEIDSSGRSGKRLKNVKGDIKFRHVSFRYPTRPEIQIFRDLCLTIRSGKTVALVGESGCGKSTVISLLQRFYDPDSGRITLDGADIQKLQLRWLRQQMGLVSQEPTLFNDTIRANIGYGKEGNATEAEIIAAAELANAHHFISSLQQGYDTAVGERGVQLSGGQKQRVAIARAVVKGPKILLLDEATSALDAESERVVQDALDRIMVGKTTLVVAHRLSTIKGADLIAVVKNGLIAEKGNHESLMNIKNGRYASLVALHATASSQ* 1274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0308 1273 ProSitePatterns ABC transporters family signature. 534 548 IPR017871 GO:0005524|GO:0016887
Vvi5g0308 1273 FunFam ABC transporter B family member 1 1018 1268 - -
Vvi5g0308 1273 CDD ABC_6TM_Pgp_ABCB1_D1_like 72 355 - -
Vvi5g0308 1273 PANTHER ABC TRANSPORTER B FAMILY 38 635 IPR039421 -
Vvi5g0308 1273 SUPERFAMILY ABC transporter transmembrane region 694 1007 IPR036640 GO:0005524|GO:0016020
Vvi5g0308 1273 SUPERFAMILY ABC transporter transmembrane region 59 379 IPR036640 GO:0005524|GO:0016020
Vvi5g0308 1273 CDD ABC_6TM_Pgp_ABCB1_D2_like 698 1011 - -
Vvi5g0308 1273 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 395 631 IPR003439 GO:0005524
Vvi5g0308 1273 MobiDBLite consensus disorder prediction 1 24 - -
Vvi5g0308 1273 CDD ABC_MTABC3_MDL1_MDL2 1028 1264 - -
Vvi5g0308 1273 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1028 1265 IPR003439 GO:0005524
Vvi5g0308 1273 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 707 993 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi5g0308 1273 FunFam ABC transporter B family member 9 59 391 - -
Vvi5g0308 1273 Pfam ABC transporter transmembrane region 72 344 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi5g0308 1273 Pfam ABC transporter transmembrane region 706 974 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi5g0308 1273 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1020 1265 IPR027417 -
Vvi5g0308 1273 Gene3D ABC transporter type 1, transmembrane domain 59 995 IPR036640 GO:0005524|GO:0016020
Vvi5g0308 1273 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 386 633 IPR027417 -
Vvi5g0308 1273 FunFam ABC transporter B family member 1 385 634 - -
Vvi5g0308 1273 SMART AAA_5 1055 1248 IPR003593 GO:0016887
Vvi5g0308 1273 SMART AAA_5 422 608 IPR003593 GO:0016887
Vvi5g0308 1273 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 73 360 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi5g0308 1273 Gene3D - 1018 1268 IPR027417 -
Vvi5g0308 1273 Gene3D - 385 634 IPR027417 -
Vvi5g0308 1273 CDD ABC_MTABC3_MDL1_MDL2 395 633 - -
Vvi5g0308 1273 Gene3D ABC transporter type 1, transmembrane domain 996 1017 IPR036640 GO:0005524|GO:0016020
Vvi5g0308 1273 ProSitePatterns ABC transporters family signature. 1168 1182 IPR017871 GO:0005524|GO:0016887
Vvi5g0308 1273 FunFam ABC transporter B family member 1 686 994 - -
Vvi5g0308 1273 MobiDBLite consensus disorder prediction 8 24 - -
Vvi5g0308 1273 Pfam ABC transporter 415 562 IPR003439 GO:0005524
Vvi5g0308 1273 Pfam ABC transporter 1048 1196 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0308 Vvi-Chr5 2727766 2732714 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0308 55 1273 Calmodulin-binding Proteins AT2G36910 44.944 0.0 1042
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0308 K05658 - vvi:100266576 2400.93