Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0307 ATGGCTGGGGAGAATGGTTGGAGAGGAGGCAAATACACAGAGCAGGCCACAGCTTCAACAAGCCATTCATCAGTGATGGAGATAGAGAAAGTCCCAAACGATACAGATAGTAAACAGGAGACAGACACAAACAGGGAAAAAGAAGAAAGTACTCGAACAGTTCCATTCTGCAAGCTGTTCTCATTTGCTGACTCCTGGGATTATCTATTCATGTTTGTGGGCGCAGTCGCTGCTGCTGCAAATGGGGTATCCACGCCTCTTATGACCATACTCTTTGGAGATGTAATCAATTCTTTTGGAAAAGACTCGAACTCCAAAGATATGGTTCATGAAGTTTCCAAGGTTTCTCTGAAGTTTGTGTACTTAGCAATTGGGACTGGAGTTGCATCATTTCTTCAGGTGACTTGCTGGATGCTCACAGGTGAGAGACAGGCGGCACGAATAAGAAGTTTGTACTTGAAAACCATATTGAGGCAAGATGTTGGCTTCTTTGATAAGTTCACTAATGCTGGAGAAGTTGTTGGGAGGATGTCTGGTGACACGGTTTTTATCCAAGATGCCATGGGTGAGAAGGTTGGAAAGTTTATACAGTTGATGGCAACATTCTTGGGAGGCTTTATTGTAGCTTTCTGCAAGGGGTGGCTTCTCACCCTTGTCATGTTATCATGTTTTCCACCTCTCGTCATCGTCGGTGCTTTCACGACCATGTTTATAACCAAGATGGCATCCCGCGGACAAGCTGCATATTCAGTTGCAGCAGTTGTAGTAGAACAGACAATTGGCTCAATCAGAACTGTTGCTTCTTTTACTGGGGAAAAGCAAGCCATAGCCAAATACAACCAGTCTTTGTCCAAAGCCTACACATCCGGTGTGCAAGAGTCCGTGCTTTCAGGGCTAGGTTTTGGATTATTTATGTTTGTCTTATTCGCAAGTTATGCTTTGGCCATGTGGTTTGGTTCCAAAATGATAATTGATAAAGGATACACAGGAGGGGCTGTCATGAATATAATTTTTTCTGTGGTGGCTGGCTCCATGTCTCTAGGGCAGGCATCTCCATGCTTGAGTGCATTTGGCTCTGGACAAGCTGCAGCATTTAAGATGTTTGAGACAATAGAAAGAAAGCCAGAAATAGATGCCTACAGCAGTGATGGACAGAAATTGGATGATATTCAGGGCGATGTGGAACTAAGGGATGTTTATTTCAGTTATCCAACAAGGCCAGATGAACAAGTATTTAAAGGATTCTCACTTTCAATACCTAGTGGTACAACTGCAGCCTTGGTTGGAGAGAGTGGAAGTGGGAAATCGACTGTGATCAGTTTGATAGAGAGGTTTTATGACCCGCAAGCTGGTGAAGTTCTTATAGATGGTATCAATCTCAAGGAATTTCAGCTGAGATGGATCAGAGGTAAAATAGGCCTTGTCAGCCAGGAACCGGTTCTGTTCACTTCTAGCATTAGAGATAACATCGCCTATGGGAAGGATGGAGCTACTATAGAAGAAATAAGGGCTGCTGCTGAGCTTGCCAATGCTTCTAAATTCATAGATAAACTCCCTCAGGGACTAGACACACTGGTTGGTGAACATGGAACTCAGTTGTCCGGGGGCCAAAAGCAGAGAGTTGCTATAGCCAGAGCAATTCTCAAGGACCCGAGAATTCTACTTCTAGATGAAGCTACAAGTGCCCTTGATGCAGAATCTGAAAGGGTTGTGCAAGAGGCATTGGACAGAGTTATGATCAACCGTACTACCATCATCGTAGCCCATCGTTTGAGTACAGTGAGGAATGCAGACATGATTGCTGTTATTCATCGAGGAAAAATTGTTGAAAAAGGAGCACACTCTGAGCTAATCAAGGATCCTGATGGGGCATACAGTCTGCTTATAAGGTTGCAAGAAATTAGCTCAGAACAGAATGCTTCACATGATCAGGAAAAACCAGAGATCTCTGTGGATTCAGGAAGACATTCAAGTAAGCGGATGTCTTTGTTACGATCTATAAGCCGATCATCCAGCATTGGACAAAGCAGCCGCCACTCTTTCTCTATGTCATTTGGTGTACCCCCTGACATCAACATCATAGAAACAGCACCTGATGGACAAGATCCAGCACCATTGGAGCATCCCCCTAAAGTCCCGCTTGGTCGCTTGGCCTATCTTAACAAGCCAGAAATTCCATTTCTACTACTTGGTACTATAGCTGCAGTTGTCAATGGTGCAGTATTTCCAGTTTTTGGGATACTGATCTCAAGCATAATAAAATCTTTCTTCAAGCCCCCACATGAACTCAGGAAGGATGCTAGATTTTGGGCACTGATGTTTGTTGTTCTTGGTCTGGTGTCCTTTTCTTCTTTGTCATTAAGGTCTTACCTATTTTCAACTGCGGGTTTTAAGTTAATAAAAAGGATAAGAGCAATGTGCTTTGAGAAAGTAGTTTACATGGAAGTAAGTTGGTTCGATGAAGCTGATCACTCAAGCGGTTCAATTGGCGCAAGGCTTTCTGCAGATGCGGCCATGGTGAGAAGTCTGGTTGGAGATGCCCTCTCTTTGCTTGTACAGAACAGTGCAGCAATGATTGCTGGCTTGGTTATTGCCTTTGTAGCAAACTGGAAAATGTCTTTTATCATCCTTGTGTTGCTACCTCTATTTGGAGCTAATGGATACGTTCAAGTGAAGTTCCTGAAAGGTTTTACTGCAGATGCAAAGAAAAAGTATGAGGAAGCAAGTCAAGTAGCCAATGATGCAGTTGGGAGTATAAGAACAGTTGCTTCTTTCTGTGCTGAAGAGAAAGTGATGCAGCTATACCAGCAGAAATGTGAAGGCCCCATGAATGCAGGGATAAGGGAAGGGTTAGTTGGTGGGGTTGGTTATGGGGTATCCTTCTTCTTGCTGTTTGCTGTCTATGCTACTGCCTTTTATGCTGGCGCTCGACTGGTTGATGTTGGGCAGGCAACATTCGCTGAGGTTTTTCAGGTTTTCTTTGTTCTCACCCTGGCAGCTGTTGGAGTCTCTCAATCAAGCTCCCTCGCTCCTGATACAGGCAAAGCCAAGAATGCAGCTGCTTCAATATTTGCGATTCTTGACCGTGAATCAAAAATAGACTCTAGTGATGAATCAGGAACAACATTAGAAAATGTTAAAGGAGAAATTGAGTTTCACCATGTCAGTTTCAGATATCCCACTAGACCAGACATACAGATTTTCCGTGATCTTTGCTTGGCAATTCACTCTGGCAAGTTGCTCTGGTCGGAGAAAGTGGGAGTGGTAAATCAACAGCAATCTCACTGTTGCAGAGATTTTATGACCCGGATTCAGGTCATATCACTCTGGATGGAGTAG 3339 0.4382 MAGENGWRGGKYTEQATASTSHSSVMEIEKVPNDTDSKQETDTNREKEESTRTVPFCKLFSFADSWDYLFMFVGAVAAAANGVSTPLMTILFGDVINSFGKDSNSKDMVHEVSKVSLKFVYLAIGTGVASFLQVTCWMLTGERQAARIRSLYLKTILRQDVGFFDKFTNAGEVVGRMSGDTVFIQDAMGEKVGKFIQLMATFLGGFIVAFCKGWLLTLVMLSCFPPLVIVGAFTTMFITKMASRGQAAYSVAAVVVEQTIGSIRTVASFTGEKQAIAKYNQSLSKAYTSGVQESVLSGLGFGLFMFVLFASYALAMWFGSKMIIDKGYTGGAVMNIIFSVVAGSMSLGQASPCLSAFGSGQAAAFKMFETIERKPEIDAYSSDGQKLDDIQGDVELRDVYFSYPTRPDEQVFKGFSLSIPSGTTAALVGESGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLRWIRGKIGLVSQEPVLFTSSIRDNIAYGKDGATIEEIRAAAELANASKFIDKLPQGLDTLVGEHGTQLSGGQKQRVAIARAILKDPRILLLDEATSALDAESERVVQEALDRVMINRTTIIVAHRLSTVRNADMIAVIHRGKIVEKGAHSELIKDPDGAYSLLIRLQEISSEQNASHDQEKPEISVDSGRHSSKRMSLLRSISRSSSIGQSSRHSFSMSFGVPPDINIIETAPDGQDPAPLEHPPKVPLGRLAYLNKPEIPFLLLGTIAAVVNGAVFPVFGILISSIIKSFFKPPHELRKDARFWALMFVVLGLVSFSSLSLRSYLFSTAGFKLIKRIRAMCFEKVVYMEVSWFDEADHSSGSIGARLSADAAMVRSLVGDALSLLVQNSAAMIAGLVIAFVANWKMSFIILVLLPLFGANGYVQVKFLKGFTADAKKKYEEASQVANDAVGSIRTVASFCAEEKVMQLYQQKCEGPMNAGIREGLVGGVGYGVSFFLLFAVYATAFYAGARLVDVGQATFAEVFQVFFVLTLAAVGVSQSSSLAPDTGKAKNAAASIFAILDRESKIDSSDESGTTLENVKGEIEFHHVSFRYPTRPDIQIFRDLCLAIHSGKLLWSEKVGVVNQQQSHCCRDFMTRIQVISLWME* 1113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0307 1112 MobiDBLite consensus disorder prediction 636 657 - -
Vvi5g0307 1112 Pfam ABC transporter 413 561 IPR003439 GO:0005524
Vvi5g0307 1112 SUPERFAMILY ABC transporter transmembrane region 711 1030 IPR036640 GO:0005524|GO:0016020
Vvi5g0307 1112 MobiDBLite consensus disorder prediction 1 49 - -
Vvi5g0307 1112 FunFam ABC transporter B family member 9 1017 1039 - -
Vvi5g0307 1112 Gene3D ABC transporter type 1, transmembrane domain 711 1017 IPR036640 GO:0005524|GO:0016020
Vvi5g0307 1112 Gene3D ABC transporter type 1, transmembrane domain 1018 1039 IPR036640 GO:0005524|GO:0016020
Vvi5g0307 1112 FunFam ABC transporter B family member 1 384 633 - -
Vvi5g0307 1112 SUPERFAMILY ABC transporter transmembrane region 58 376 IPR036640 GO:0005524|GO:0016020
Vvi5g0307 1112 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 385 632 IPR027417 -
Vvi5g0307 1112 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 729 1015 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi5g0307 1112 MobiDBLite consensus disorder prediction 29 49 - -
Vvi5g0307 1112 CDD ABC_6TM_Pgp_ABCB1_D2_like 718 1033 - -
Vvi5g0307 1112 Gene3D ABC transporter type 1, transmembrane domain 58 641 IPR036640 GO:0005524|GO:0016020
Vvi5g0307 1112 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 394 630 IPR003439 GO:0005524
Vvi5g0307 1112 MobiDBLite consensus disorder prediction 12 28 - -
Vvi5g0307 1112 CDD ABC_6TM_Pgp_ABCB1_D1_like 84 367 - -
Vvi5g0307 1112 MobiDBLite consensus disorder prediction 639 657 - -
Vvi5g0307 1112 Pfam ABC transporter transmembrane region 71 344 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi5g0307 1112 Pfam ABC transporter transmembrane region 728 999 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi5g0307 1112 PANTHER ABC TRANSPORTER B FAMILY 32 634 IPR039421 -
Vvi5g0307 1112 CDD ABC_MTABC3_MDL1_MDL2 394 632 - -
Vvi5g0307 1112 SMART AAA_5 421 607 IPR003593 GO:0016887
Vvi5g0307 1112 FunFam ABC transporter B family member 1 708 1016 - -
Vvi5g0307 1112 ProSitePatterns ABC transporters family signature. 533 547 IPR017871 GO:0005524|GO:0016887
Vvi5g0307 1112 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 72 359 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi5g0307 1112 FunFam ABC transporter B family member 9 58 391 - -
Vvi5g0307 1112 Gene3D - 384 633 IPR027417 -
Vvi5g0307 1112 Gene3D - 1040 1080 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0307 Vvi-Chr5 2720196 2724725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0307 64 638 Calmodulin-binding Proteins AT2G36910 38.765 2.30e-117 391