Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0301 ATGGAGAGATTATACAATGAAGGGGGGGAGGGTGGTGGGATAAAGAGGGAGATTGCCACCTTGAAACTCCTCAAACATCCAAACGTGGTCAGATTACATGAGGTCTTGGCAAGCAAAACCAAGATTTACATGGTCCTTGAGTATGTGACTGGCGGCGAATTGTTTGACAGAATTGCATCCAATGGGAAACTTTCAGAAGCTGAAGGCAGGAAACTCTTCCAACAGTTGATTGATGCTGTGAGCTATTGCCACAACAAAGGTGTTTTCCATAGGGATCTCAAGCTAGAGAATGTTCTTGTTGATTCAAAAGGAAACATAAAGATCTCTGATTTTGGCCTCAGTGCCTTACCACAGCATTTTAGGGATGATGGGTTGTTGCATACAACCTGTGGAAGTCCAAACTACGTTGCACCAGAGATTCTTGCAAATAGAGGTTACGACGGTTCAACTTCTGACATTTGGTCATGTGGTGTCATCTTATACGTGATTCTTACAGGGTATCTCCCTTTTGATGATAGAAATCTTGCTGTTCTCTATCAGAAGATTTTCAAGGGGGATGCTCAGATGCCCAAATGGCTGTCATCAGGTGCCAAGAACATTATAAAGAGAATTCTTGACCCCAAACCTGAAACCCGAATAACAATGGCAGGGATCAAAGCAGATGAATGGTTCAAGCAACAGTATACACCAGCTTATCCCGAAGAGGAAGAAGAAGATATTCATGTGGATGATGAAGCTTTCTCAATATATGAGCCAATGGAAGCAAAGAAGAGTCCAGGCTCACCCAACCTCATCAATGCCTTCCAGCTGATTGGAATGTCCTCATGCCTTGATCTCTCTGGTTTCTTTGAGAAAGAGGATGTGTCAGAGAGGAAAATCAGATTTACCTCAAATCATTGCCCAAAAGATTTACTTGAGAAGATTGAGGATATTGTCACAGAGATGGGATTTCGAGTAGAGAAGAAAAATGGAAGGCTTAAAGTGATGCAAGAGCATAAGTGTCAGAAAAGCTTTGGGAGTCTTTCCGTGGCAGCAGAGGTGTTTGAAATAAGCCCATCCTTGTATGTAGTTGAGTTGAGAAAATCTTATGGGGATTCTTCTGTTTATAGACAGTTGTGTAAAAAGCTATCAAGTGATCTGGGTGTTCCTACCAGCCAAGAGCTATTGAAAGTTTGA 1176 0.4218 MERLYNEGGEGGGIKREIATLKLLKHPNVVRLHEVLASKTKIYMVLEYVTGGELFDRIASNGKLSEAEGRKLFQQLIDAVSYCHNKGVFHRDLKLENVLVDSKGNIKISDFGLSALPQHFRDDGLLHTTCGSPNYVAPEILANRGYDGSTSDIWSCGVILYVILTGYLPFDDRNLAVLYQKIFKGDAQMPKWLSSGAKNIIKRILDPKPETRITMAGIKADEWFKQQYTPAYPEEEEEDIHVDDEAFSIYEPMEAKKSPGSPNLINAFQLIGMSSCLDLSGFFEKEDVSERKIRFTSNHCPKDLLEKIEDIVTEMGFRVEKKNGRLKVMQEHKCQKSFGSLSVAAEVFEISPSLYVVELRKSYGDSSVYRQLCKKLSSDLGVPTSQELLKV* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0301 391 CDD CIPK_C 266 380 - -
Vvi5g0301 391 SUPERFAMILY Protein kinase-like (PK-like) 14 242 IPR011009 -
Vvi5g0301 391 SMART serkin_6 2 224 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0301 391 Gene3D Kinase associated domain 1, KA1 267 382 - -
Vvi5g0301 391 ProSiteProfiles Protein kinase domain profile. 1 224 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0301 391 ProSitePatterns Serine/Threonine protein kinases active-site signature. 88 100 IPR008271 GO:0004672|GO:0006468
Vvi5g0301 391 Pfam Protein kinase domain 14 224 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0301 391 Gene3D Transferase(Phosphotransferase) domain 1 6 266 - -
Vvi5g0301 391 ProSiteProfiles NAF domain profile. 260 284 IPR018451 GO:0007165
Vvi5g0301 391 Pfam NAF domain 262 321 IPR004041 GO:0007165
Vvi5g0301 391 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 14 365 - -
Vvi5g0301 391 FunFam Non-specific serine/threonine protein kinase 262 384 - -
Vvi5g0301 391 FunFam Non-specific serine/threonine protein kinase 7 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0301 Vvi-Chr5 2672502 2676586 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0301 32 387 CBL-interacting serine-threonine protein kinases AT3G17510 71.508 0.0 511
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vvi5g0301 Pkinase 6.9e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0301 K07198 - vvi:100259621 763.066