Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0298 ATGCAAGGAGGCAAGGTTGCTGTAGGAGGGATATCCATTATCCTTGTGGTGGGTGTGGCCATTGGCCTTATTGCTGGTTTACACGGCAGAGGTGGCCACAAGTCAACTGATGGGGACGACGAGAAGGTCCTCTCCACCACTACTAAGGCAGTGGCCGCAATCTGCTCGCCGACGGATTACAAGCAGCAATGTATTAGTAGTTTTCAGACGCTGGCCAATAACCATAGCGCCACCCCGAAGGATTTCCTCATGGCGGCCATTGATATCACCATGAAAGAGGTGAAAGAAGCCATTGGAAAGTCGGAATCAATCGGGCTGGCTGGGAACAGTTCTGGTAGGCAGAAGATGGCTACAGAAGATTGCCAGGATTTGTTGCAATTAGCCATTGGTGAGCTTCAAGCCTCCTTTTCAATGGTGGGTGATGCAGCAATGCATACCATCAATGACAGAGCGCAAGATCTCAAGAACTGGTTGAGTGCTGTTATTTCATATCAGCAGTCATGCATGGACGGGTTCGATGAGACACCGGAGGTGAAAAGCGCAATTCAGAACGGGCTTCTGAATGCCACTCAGCTCACCAGCAATGCCCTGGCCATTGTTTCTGAGATTTCTGCAATCCTCACCTCATTCAACATCCCCTTGAACTTCACTTCAAGCTTCAGGCGACTCCAGGAAGCCACTGAGGAAAGTGACCAGTACCCGTCATGGTTTTCGGCTGCAGACAGGAAACTATTGGGGCGTGTTGACAACGGCAAAGTGACGCCTAATGCAGTGGTGGCATTGGATGGGAGTGGACAATATAAATCCATTGGTGCAGCTCTTGCTGCCTATCCTAAGAACCTCAATGGGAGATATGTGATATACGTGAAGGCCGGGATTTACGACGAGTATATAACTATTGAGAAGAACCTGGTCAATATTTTCATGTATGGAGATGGACCCAGAAAGACCATGGTGACAGGGAAAAAGAGCTTCCTCGATGGCATAACCACCTACAAGACTTCCACCTTCTCGGTCATTGGAAACGGGTTTATATGCAAGTCCATGGGATTCCGGAACACGGCAGGGCCAGAGGGGCACCAGGCGGTGGCTCTGCGAGTGCAGTCGGACTATTCAGCCTTCTTCAACTGCAGAATGGATGGGTACCAGGACACCTTGTACGTGCAGGCGCATCGCCAGTTCTACCGCAACTGTGTCATCTCCGGGACTGTGGACTTCATCTTTGGCGATTCTACTACACTCATCCAGAACTCGTTGATCATAGTGAGGAAGCCGCTGGACAACCAGCAGAACACAATCACTGCACATGGAAGAGCAGAGAAGCGTGAGACCACAGGGCTGGTGATCCAGAACTGCAGAATTGTCCCAGAAGAGAAACTTTTTCCTACAAGATTTAAAACCCCATCATACCTGGGCCGCCCGTGGAAGGCATACTCAAGGACTGTGGTCATGGAATCCACCATGGGAGACTTCATCCACCCAGCAGGATGGCTACCATGGATGGGCAACTTTGCACTTGACACATTGTATTATGCCGAGTATGCTAACAAAGGACCCGGTGCCAACACGGCTCAGAGGGTTAAATGGAAGGGTTATAAGGTGATCACCAACAGAAATGAGGCTCTTCAATTCACTGCCGGCCCTTTTATCCAAGGTAACGAGTGGTTGAGACTCACCGGTGCACCTTACTTCCTCGGTTTCAGGACCATGTAG 1713 0.502 MQGGKVAVGGISIILVVGVAIGLIAGLHGRGGHKSTDGDDEKVLSTTTKAVAAICSPTDYKQQCISSFQTLANNHSATPKDFLMAAIDITMKEVKEAIGKSESIGLAGNSSGRQKMATEDCQDLLQLAIGELQASFSMVGDAAMHTINDRAQDLKNWLSAVISYQQSCMDGFDETPEVKSAIQNGLLNATQLTSNALAIVSEISAILTSFNIPLNFTSSFRRLQEATEESDQYPSWFSAADRKLLGRVDNGKVTPNAVVALDGSGQYKSIGAALAAYPKNLNGRYVIYVKAGIYDEYITIEKNLVNIFMYGDGPRKTMVTGKKSFLDGITTYKTSTFSVIGNGFICKSMGFRNTAGPEGHQAVALRVQSDYSAFFNCRMDGYQDTLYVQAHRQFYRNCVISGTVDFIFGDSTTLIQNSLIIVRKPLDNQQNTITAHGRAEKRETTGLVIQNCRIVPEEKLFPTRFKTPSYLGRPWKAYSRTVVMESTMGDFIHPAGWLPWMGNFALDTLYYAEYANKGPGANTAQRVKWKGYKVITNRNEALQFTAGPFIQGNEWLRLTGAPYFLGFRTM* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0298 570 SMART PMEI_2 46 199 IPR006501 GO:0004857
Vvi5g0298 570 SUPERFAMILY Pectin lyase-like 255 566 IPR011050 -
Vvi5g0298 570 NCBIfam pectinesterase inhibitor domain 46 202 IPR006501 GO:0004857
Vvi5g0298 570 CDD PMEI-like_3 53 205 - -
Vvi5g0298 570 Gene3D - 250 567 IPR012334 -
Vvi5g0298 570 FunFam Pectinesterase 47 204 - -
Vvi5g0298 570 Gene3D Invertase/pectin methylesterase inhibitor family protein 47 204 IPR035513 -
Vvi5g0298 570 ProSitePatterns Pectinesterase signature 2. 400 409 IPR033131 -
Vvi5g0298 570 PANTHER PECTINESTERASE 19 557 - -
Vvi5g0298 570 Pfam Plant invertase/pectin methylesterase inhibitor 50 199 IPR006501 GO:0004857
Vvi5g0298 570 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 49 203 IPR035513 -
Vvi5g0298 570 Pfam Pectinesterase 256 553 IPR000070 GO:0030599|GO:0042545
Vvi5g0298 570 FunFam Pectinesterase 250 567 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0298 Vvi-Chr5 2656161 2657956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0298 13 567 Carbohydrate Esterase AT3G05610 42.959 8.13e-165 483
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0298 K01051 - vvi:100242515 1122.84