Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0291 ATGGCGTCTGGTCTTCAGGCTGAACTATCCAAGAAGACATTTCTTTTTGGTCTTAAGGTGTGGGTTTTAGTGGGGATCTTTGTGGGGGTGTTTATTGTGATAATTCTCTTGTTGATGTCACTGTGTCTTACTTCACGGAAGAAATCAAGAAGGGCTAATAACAAAATTCCCCTTAGCCAAATTCCAGCTATTTCGAAGGAAATCAAAGAGGTAAGGGTTGATCAAGTTTCTGCAGACAACTGTGGTCCTCATGATGGAGTTTTCCTTGCCCTTAATGACAAATTCAGTGATAAAGAATCAGAGAAGGTTTTGATCCCCACAAAAAATGGGGATAATAGCAGTCAATCTGGTTCCTTTAATCATGTGGAGAAAGATGGTGTTGGGTCTCAATCAGGAGAAGAGGTTGGTTCTGGGACCATTAATGTGTATAGACCTTCTTCACATCCTATAACAGCCCCATCACCTCTAATTGGTTTGCCCGAGTTTTCTCACCTTGGTTGGGGCCATTGGTTTACATTAAGGGACCTGGAGCTTGCAACAAACCGGTTTTCGAAGGAAAATGTCCTTGGTGAGGGTGGGTATGGAATTGTTTATCGAGGCCATCTGATCAATGGGACTCCCGTGGCTGTTAAGAAGCTCCTCAATAATTTAGGACAAGCAGAGAAGGAATTCAGAGTGGAAGTTGAGGCTATTGGTCATGTGCGACATAAAAACTTAGTTCGACTTCTGGGCTACTGCATTGAAGGAACCCATAGGCTGTTGGTATATGAATACGTCAACAATGGCAATTTAGAGCAATGGCTTCATGGAGCGATGCGTCAGCATGGATATCTTACTTGGGAGGCCCGCATGAAAATTTTACTTGGCACTGCTAAGGCGCTCGCCTACTTGCATGAAGCTATTGAACCAAAAGTTGTGCATCGAGATATCAAATCCAGCAATATATTGATTGATGATGAATTTAATGCTAAGATATCTGACTTTGGTCTGGCCAAATTACTCGGTGCAGGAAGGAGTCATATCACAACTAGAGTTATGGGGACCTTTGGATATGTGGCTCCAGAATATGCCAATTCTGGCCTTTTAAATGAGAAGAGTGATGTTTATAGCTTTGGGGTTGTGCTCTTGGAAGCAATCACTGGAAGAGATCCAGTAGATTACGGTCGACCTGCACATGAGGTAAATCTTGTTGATTGGCTCAAGATGATGGTTGGCAGCAGGCGCTCAGAAGAAGTTGTAGACCCAAACATTGAGACTAGGCCATCAACAAGTGCCCTTAAAAGAGGCCTTTTGACTGCATTAAGGTGTGTCGACCCAGATGCTGACAAGAGACCAAAGATGAGTCAAGTCGTTCGCATGCTTGAATCAGAGGAATATCCTATACCACGAGAGGATCGGAGGCGCAGAAGGAGTCATGCAGGGAACAATGAAGCAGAGTCCCAGAGGGAGAACTCTGATACTGATAGGAGTGAAATTCCAGATTCAAGGGCAGAGAATAGAAGGAAGCATCGGACATCAGCAAAGGGGGCAAACCATTTATAG 1542 0.4397 MASGLQAELSKKTFLFGLKVWVLVGIFVGVFIVIILLLMSLCLTSRKKSRRANNKIPLSQIPAISKEIKEVRVDQVSADNCGPHDGVFLALNDKFSDKESEKVLIPTKNGDNSSQSGSFNHVEKDGVGSQSGEEVGSGTINVYRPSSHPITAPSPLIGLPEFSHLGWGHWFTLRDLELATNRFSKENVLGEGGYGIVYRGHLINGTPVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGTHRLLVYEYVNNGNLEQWLHGAMRQHGYLTWEARMKILLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDEFNAKISDFGLAKLLGAGRSHITTRVMGTFGYVAPEYANSGLLNEKSDVYSFGVVLLEAITGRDPVDYGRPAHEVNLVDWLKMMVGSRRSEEVVDPNIETRPSTSALKRGLLTALRCVDPDADKRPKMSQVVRMLESEEYPIPREDRRRRRSHAGNNEAESQRENSDTDRSEIPDSRAENRRKHRTSAKGANHL* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0291 513 SMART serkin_6 183 454 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0291 513 FunFam Putative receptor-like protein kinase 165 258 - -
Vvi5g0291 513 ProSitePatterns Serine/Threonine protein kinases active-site signature. 305 317 IPR008271 GO:0004672|GO:0006468
Vvi5g0291 513 ProSiteProfiles Protein kinase domain profile. 183 460 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0291 513 SUPERFAMILY Protein kinase-like (PK-like) 167 462 IPR011009 -
Vvi5g0291 513 Gene3D Phosphorylase Kinase; domain 1 165 258 - -
Vvi5g0291 513 Gene3D Transferase(Phosphotransferase) domain 1 259 470 - -
Vvi5g0291 513 MobiDBLite consensus disorder prediction 105 134 - -
Vvi5g0291 513 CDD STKc_IRAK 189 455 - -
Vvi5g0291 513 FunFam Putative receptor-like serine/threonine-protein kinase 259 470 - -
Vvi5g0291 513 Pfam Protein kinase domain 184 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0291 513 MobiDBLite consensus disorder prediction 442 513 - -
Vvi5g0291 513 PANTHER OS01G0323000 PROTEIN 5 486 - -
Vvi5g0291 513 MobiDBLite consensus disorder prediction 106 125 - -
Vvi5g0291 513 MobiDBLite consensus disorder prediction 442 501 - -
Vvi5g0291 513 ProSitePatterns Protein kinases ATP-binding region signature. 189 212 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0291 Vvi-Chr5 2592978 2596009 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0291 17 457 Trihelix Transcription Factor Family AT1G70460 41.704 1.01e-95 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Vvi5g0291 Pkinase 4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0291 - - vvi:100261316 984.556