Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0290 ATGACTGAAGCTTCACGATCAAACGACACACAAACTGTGGATGTCCTGCCTATTGCTGTCTCAGCCATCTCTGTGGATGAATTGAAAGAAATTACAGATAACTTTGGTCAACAGGCTTTAATTGGGGAAGGCTCATATGGAAGAGTATACCATGGTCTTCTGAAAACTGGGCAGGCTGCAGCCATAAAGAAGTTGGATTCCAGCAAGCAACCAGACCAAGAATTTTTAGCGCAGGTTTCCATGGTATCAAGACTAAAGAATGAGAATGTTGTTGAGCTAGTTGGCTATTCTGTTGATGGCGGTCTCCGTGTTGTAGCTTATGAGTATGCTTCTAATGGATCCCTTCATGATATTCTTCATGGAAGGAAAGGTGTCAAAGGAGCACAGCCAGGTCCAGTACTCTCATGGTCTCAAAGAGTTAAGATTGCGGTTGGAGCGGCTAAAGGACTAGAATATTTACATGAGAAGGCACGACCTCATATTATTCATCGTGACATCAAGTCCAGCAATGTGCTACTATTTGATGATGATGTTGCTAAGATTGCTGATTTTGATCTGTCAAATCAAGCCCCTGATTCAGCAGCACGTCTTCACTCTACTCGTGTCCTTGGAACCTTTGGTTATCACGCTCCAGAATATGCAATGACCGGACAGCTGAGTTCAAAGAGTGATGTTTACAGCTTTGGTGTTGTCCTGCTGGAACTCTTGACTGGGCGTAAACCTGTTGATCACACACTGCCACGTGGTCAGCAGAGTCTTGTAACATGGGCCACTCCAAAACTCAGTGAAGATAAGGTGAAGCAGTGTGTTGACACCAGACTAGGAGGAGAATACCCTCCCAAGGCTGTAGCAAAGATGGCTGCTGTTGCTGCCTTGTGTGTACAATATGAAGCTGATTTCCGGCCGAACATGAGCATTGTAGTCAAAGCTCTGCAGCCTCTGTTGAATGCTCGGCCTGGACATACACCAACCTTGTGA 978 0.454 MTEASRSNDTQTVDVLPIAVSAISVDELKEITDNFGQQALIGEGSYGRVYHGLLKTGQAAAIKKLDSSKQPDQEFLAQVSMVSRLKNENVVELVGYSVDGGLRVVAYEYASNGSLHDILHGRKGVKGAQPGPVLSWSQRVKIAVGAAKGLEYLHEKARPHIIHRDIKSSNVLLFDDDVAKIADFDLSNQAPDSAARLHSTRVLGTFGYHAPEYAMTGQLSSKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPKLSEDKVKQCVDTRLGGEYPPKAVAKMAAVAALCVQYEADFRPNMSIVVKALQPLLNARPGHTPTL* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0290 325 ProSitePatterns Protein kinases ATP-binding region signature. 41 64 IPR017441 GO:0005524
Vvi5g0290 325 ProSiteProfiles Protein kinase domain profile. 35 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0290 325 Gene3D Transferase(Phosphotransferase) domain 1 110 320 - -
Vvi5g0290 325 Pfam Protein tyrosine and serine/threonine kinase 39 311 IPR001245 GO:0004672|GO:0006468
Vvi5g0290 325 SMART serkin_6 35 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0290 325 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 5 318 - -
Vvi5g0290 325 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Vvi5g0290 325 FunFam pto-interacting protein 1 111 322 - -
Vvi5g0290 325 Gene3D Phosphorylase Kinase; domain 1 1 109 - -
Vvi5g0290 325 FunFam PTI1-like tyrosine-protein kinase 3 1 109 - -
Vvi5g0290 325 SUPERFAMILY Protein kinase-like (PK-like) 9 311 IPR011009 -
Vvi5g0290 325 PIRSF ILK 19 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0290 Vvi-Chr5 2588004 2591140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0290 17 312 Receptor kinase-like Gene Family AT4G02010 50.667 1.04e-93 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Vvi5g0290 PK_Tyr_Ser-Thr 2.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0290 K13436 - vvi:100266523 629.787