Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0288 ATGGAGCACAAATTCGGAGGTAAAGCCAACCATTTGCGTGGTCCAACGGTGTCTGATTTGAAGAAACTTGGGAAAAGGACTCTGGAATGGGATTTGAATGGCTGGAAATGGGATGGGGATCTTTTCAGGGCTACTCAGCTGAACTCTGTGCCATCAGATTGTGGGAGTAAGCAATTCTTTCCACCTGCATCTGAACCAGTTACTGTGGGTTTATCAATCAGTTCATCATCGTCAGATGAAATAATTGTAGATGATGGGAAAGGGAAGAGGGAACTGGAGAAAAAGCGGAGAGTTGTGGTTCTTGAAGACGAAGCGTGCGATGAGCTCGGCTCCCTTAATTTGAAGCTTGGTGCTCAAGTTTACCCTATCATGGAAGGGGAGGTAAAGAGTGGGAAGAAGACTAAGCTCATTGGGGCTACCCCAAATCGTGCAGTCTGCCAAGTGGAGGATTGCAGAGCTGATTTGGGCAATGCCAAGGATTACCATAGACGACATAAAGTTTGTGACATGCATTCAAAGGCTAGTAAAGCTCTGGTCGGAAATGTTATGCAGCGGTTCTGTCAGCAGTGTAGCAGGTTTCACCTTCTTCAAGAGTTTGATGAAGGAAAAAGAAGTTGTCGAAGGCGTTTGGCAGGTCATAACAGACGGAGGAGGAAAACGCATCCTGATACCGTAGTTAATGGAGGTTCCCTGAATGATGAACGAGGAATTCGTTATCTACTGATGAGCGTGCTGAGAATACTCTCCAATATGCATGCAAATAGCTCAGATCAAACAAAGGATCAGGATCTCCTATCTCATATATTAAAGAACCTTGCCAGTTCTGGTGGTACAATAAATGAAAGGGACATTCCAGGGTTATTGCAGGGATCTCAAGATTTACTGAATGCTGGAACCTCTGTTGGAACTGCAGAAAAGGTGCCAGATATGGTTTCAAATGGTCTTGTACCCAATAAACTTTTGGGATCAGCCTCTAGGATGGCTGATGGCAGTGATCTTCAGGCCTCTTCTAGGCCTATTGGGCCATGCTTGATGGCAACTGTACCTGAAATGGCAGAGAAAAGAGTATTTACTGATGATGCTCAGGTTGGAATGCTACAAAACTTGTCTGGTACCCAACCCACAAATAGATTTCCAACAGGAGATGGTGTTCCAGCCATGGAAAATATGCAAGGAACCACACATGGGAGGATCAAGTTAAATAACTTCGACTTAAATAATGTCTATAATGATTCTCAAGATTGCATAGAAAACCCAGAGAGGTCTTATGGTCCTGCAAATCCAGGGACCAGGCCTCTTGATCGTGCTCTTTTGGTACAACAAGACTCTTACAAGTCAAGCCCACCTCAGACAAGTGCAAATTCAGATTCAACTTCTGCCCGGTCTCTGTCTACTTCTAGTGGAGAAGCTCAGAGTCGCACAGATCGAATTGTCTTTAAACTCTTTGGAAAAGATCCCAGTGATTTTCCTCTTGTTATGAGAAAGCAGGTCCTCGACTGGTTATCCCACACTCCTACGGAAATTGAGAGCTTCATCAGACCTGGCTGTATCATATTGACAATATACCTTCGCCTTGGAAAATCCACATGGGAGGAGCTCTGCTGTGATCTAGGCTCCAGTTTGAGTAGGCTTTTGGATATGTCTGAGGACTCTTTTTGGAGAACTGGTTGGGTATATACTAGAGTACAGAATCGTTTAGCATTTATCTATAGTGGTCAGGTTGTTCTAGACACCCCCTTACCATTTAAAAGCCATAATTGCAGGATCTCAAGCATCAAACCAATTGCAGTTCCTGTCTCTGAACAAGCTCAATTTGTGGTTAAGGGCTTTAACCTTGCTGGATCTGCCACAAGGTTACTCTGTGCACTTGAGGGAAGGTATTTGGTCCAAGAAACTTGTTATGAGTTGACAGAGGGTACAGATACATTCATTGAGCATGATGATCTCCAGTGCCTCAGCTTTCCTTGCTCTGTACCAAATATTAGTGGGAGAGGATTCATTGAGGTGGAAGATCATGGTCTCAACAGCAGCTTCTTTCCATTTATAGTTGCAGAGCAGGATGTATGTTCTGAGATTTGTATGCTGGAGGGTGTGATAGATATGGTTGAGACTGCTGAAGACATCCTCCGAGAAACAGGAAAAATGCAAGCCAAGTATCAAGCCCTGGACTTTATACATGAAATGGGTTGGCTGCTTCATAGAAACTATTTGAAGTTTAGATTGGGTGACATGGATCCCAATCTGGACCTCTTTCCTTTCAAAAGGTTTAAGTGCCTCATGGAGTTTTCAGTGGACCATGATTGGTGTGCTGTTGTGAAGAAACTCTTGGGTATTGTGTTCAGTGGGACAGTAAATGCCGGGGAGCATCCTTCCATTGAAATTGCATTGTTGGACATGTGCCTCCTTCATAGCGCTGTTCGGAGAAACTGCAGACCTATGGTGGAACTCCTCTTGAGATTCATCCCAGATAAAATCTTGGATAAATCAGGTTCCAATGACAAGCGATGGCCCAACAGTGGCTCCAACTACTTGTTTAAGCCAGATTTCGTTGGTCCAGCAGGTGGGAATTGA 2571 0.4426 MEHKFGGKANHLRGPTVSDLKKLGKRTLEWDLNGWKWDGDLFRATQLNSVPSDCGSKQFFPPASEPVTVGLSISSSSSDEIIVDDGKGKRELEKKRRVVVLEDEACDELGSLNLKLGAQVYPIMEGEVKSGKKTKLIGATPNRAVCQVEDCRADLGNAKDYHRRHKVCDMHSKASKALVGNVMQRFCQQCSRFHLLQEFDEGKRSCRRRLAGHNRRRRKTHPDTVVNGGSLNDERGIRYLLMSVLRILSNMHANSSDQTKDQDLLSHILKNLASSGGTINERDIPGLLQGSQDLLNAGTSVGTAEKVPDMVSNGLVPNKLLGSASRMADGSDLQASSRPIGPCLMATVPEMAEKRVFTDDAQVGMLQNLSGTQPTNRFPTGDGVPAMENMQGTTHGRIKLNNFDLNNVYNDSQDCIENPERSYGPANPGTRPLDRALLVQQDSYKSSPPQTSANSDSTSARSLSTSSGEAQSRTDRIVFKLFGKDPSDFPLVMRKQVLDWLSHTPTEIESFIRPGCIILTIYLRLGKSTWEELCCDLGSSLSRLLDMSEDSFWRTGWVYTRVQNRLAFIYSGQVVLDTPLPFKSHNCRISSIKPIAVPVSEQAQFVVKGFNLAGSATRLLCALEGRYLVQETCYELTEGTDTFIEHDDLQCLSFPCSVPNISGRGFIEVEDHGLNSSFFPFIVAEQDVCSEICMLEGVIDMVETAEDILRETGKMQAKYQALDFIHEMGWLLHRNYLKFRLGDMDPNLDLFPFKRFKCLMEFSVDHDWCAVVKKLLGIVFSGTVNAGEHPSIEIALLDMCLLHSAVRRNCRPMVELLLRFIPDKILDKSGSNDKRWPNSGSNYLFKPDFVGPAGGN* 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0288 856 MobiDBLite consensus disorder prediction 443 469 - -
Vvi5g0288 856 FunFam Squamosa promoter-binding-like protein 14 138 207 - -
Vvi5g0288 856 Pfam SBP domain 146 219 IPR004333 GO:0003677
Vvi5g0288 856 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 130 808 IPR044817 GO:0003677
Vvi5g0288 856 Gene3D - 139 207 IPR036893 GO:0003677|GO:0005634
Vvi5g0288 856 ProSiteProfiles Zinc finger SBP-type profile. 143 220 IPR004333 GO:0003677
Vvi5g0288 856 SUPERFAMILY SBT domain 144 226 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0288 Vvi-Chr5 2565926 2573626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0288 24 854 SBP-box Gene Family AT3G60030 47.450 0.0 673
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vvi5g0288 SBP 1.9e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0288 - - vvi:100252756 1693.32