Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0283 ATGGCTGAGAGCAGGCGTTACGTTCCGAATCAACAGTTAGACCTTGAACAGATACTACTAGAAGCACAACACCGTTGGCTTCGACCAACTGAAATCTGTGAAATCCTCCGTAATTACCAGAAGTTTCTCATAACACCAGATCCACCTGTTACACCTCCAGCTGGTTCTCTGTTCCTGTTTGACCGAAAAGCACTTCGATATTTTCGCAAAGATGGTCATCGTTGGAGGAAGAAAAAAGATGGAAAAACTGTCAAAGAAGCTCATGAAAAGTTGAAGGCTGGAAGTGTGGATGTTCTACATTGCTATTATGCTCATGGGGAGGACAATGAGAACTTCCAGCGACGAAGTTATTGGATGCTTGACGAGCAGCTGGAGCACATTGTTCTTGTGCATTACAGAGAAATAAAAGAGGGATACAAAACCAGTACCAGTGTCCCTCGTTTGCCAAATGCAGTTCCAGCATCACAGATTGGAACCATTCAAGGTAGTTCAGCTCCTTGCTTGTCACAAGGGAATGCTCCTACTGTTACGGGTCAGATATCATATGCGTCAAGTCCAAATACTGCTGATTGGAGTGGACAAACTTTGTCCTCAGAATTTGAAGATGGGGATTCTGGGGATGATCCAGGAACCTCTTCTCTTGCTCAACCTATACTTGGTTCTGTATTTTACAATGCCTCTTTGCCTACACATGAAGCTTCAGGATTCGCTGGGCTATCAAGAAATCAACTTGGTTCAGGGCTTGCTGGAGTGCATTTTAGTCATGGTGCCAGCACATCTGTCCAGGATGAAATTCATGGTTCAAGCAGCAGTGTGCATGACCAGAAATTTGGCTTTGAACAACCTAATGGGGCCGATTTCATAACAAATAAACTAACCGATGCAAGATTGGATTCTGATAGAACGGTCCAAAATTTTGCAGCTCGTGGAGATGGGTTGAGTCCTGCTTTAGATATCAAAGGATTAACAGCAGCTTCTCAGAGAGCAGTCCAGGGTCCACTGGAGCACAACTTTCATTTAGTTCATCCCCAGTTCCAGAATTGTTCTAGTTCTCATGTAGCAGACACTTCTACTGCACACATTGAAAACAAGTCCAAAGAGGATGGTGCCAATAATGATGCATCAGGAGAGTTGAAGAAACTTGACAGCTTTGGGAGATGGATGGATAAAGAAATTGGTGGGGACTGTGATGATTCCTTGATGGCGTCTGACTCTGGAAATTATTGGAATACACTTGATACGCAGAATGACGACAAGGAGGTATCTAGTTTATCACGCCACATGCAGTTGGATATTGATTCTCTTGCTCCTTCTCTCTCCCAAGAACAACTATTTACTATCAACGATTTCTCACCAGATTGGGCTTATTCTGAAGATGAAACAAAGGTTTTAATCATAGGTACATTTTTGGGAGGCATGGAGCATTCTACCAACACTAAATGGTGCTGTATGTTTGGGGAAATTGAGGTTTCTGCTGAAGTTCTGACTAACAATGTCATCCGATGTCATGCTCCTTTGCATGCCCCTGGGCGTGTTCCATTCTATGTTACTTGTAGTAATAGGTTAGCCTGCAGTGAGGTTCGGGAGTTTGAATATCGTGAAAAACCATCAAGAGTTGCTTTTTCTATGGCTGTTAGAAGTACACCAGAAGATGATGTGCAGTTCCAAATACAACTGGCAAAAATGTTACATTTAGGCCAGGAGAGGAAGTGGTTAGATTGCTCTATTGAAGAATGTGACAAATGTAAGATAAAAAGTGACATATATTCAAAGAAAGATGACATAAAGAATGACTGGGAAGAGCTTGAAATGGCTAAAGATTTTATTGGCAATCATGTAAACCCTAGAGATGTTTTGATTAAAAATTTGTTGAAGGACAGGCTTTTTGAGTGGCTAGTTTGTAAAGTTCATGAAGGAGTTAGAGGTCCCCATGTTTTGGATGGCAAAGGCCAAGGTGTTATACATTTGGCAGCTGCTCTTGGTTATGAGTGGGCCATGGGCCCTATAATTGTTGCTGGTGTTAGTCCCAATTTCAGAGATGCAAGAGGAAGAACAGGGCTTCACTGGGCATCATACTTTGGGAGAGAGGAAACGGTCATTGCACTTGTTAAACTGGGCACATCTCCAGATGCTGTAGAGGACCCAACTCCAGCATTTCCTGGAGGACAAACAGCTGCTGATTTAGCATCCAGTAGAGGACATAAAGGAATTGCTGGATATTTGGCAGAAGCACATTTATCGAGTCACCTTTGTTCCTTAAGTCCCAGTGAGAATGTAATGGACTCTGTTTCTGCTAATATTGCAGCTGAAAAGGCTGCTCAAACTGCAGTACAGAATGTTGATGGGGTGATAGAAGAGCAGCTCTCCCTGAAAGGCTCTCTAGCTGCACTTAGAAAATCAGCTCATGCTGCTGCTCTAATTCAAGCTGCTTTGCGGGCTCGTTCATTCCGTGATAGACGATTAACAAGGAGCAATGATGATATTTCTGAAGCTTCTCTTGATCTAGTTGCTCTTGGTTCTTTAAACAAGGTTTCGAAGATGGGTCATTTCAAGGACTATTTGCATTCTGCAGCTGTAAAGATCCAACAAAAATACCGTGGCTGGAAGGGTAGAGAAGATTTTTTGAAGATACGGAGCCGTATTGTGAAAATTCAGGCCCATGTGAGGGGGCATCAAGTTCGCAAGCAATATAAAAAGGTGGTTTGGTCTGTTGGTATTGTGGAAAAAGCAATACTGCGTTGGAGGCGGAAAGGATCTGGCTTACGAGGATTTCGGTTGGAAAAGCCAATTGGAAATGCAGTGCCTGAGGTTGGGAAGACTGATGAATATGACTATCTGAGAGTTGGCCGGAGACAGAAATTTGCTGGAGTTGAAAAGGCACTCGCACGAGTTCAATCCATGGTTCGTCACCCAGAAGCTCGTGACCAATATATGAGGCTGGTTTCAAAATTCGATAATTTGCAGATAGGTGATGAAGGGAGCAGTGCATTGCAGCAAGCTGAAAAATCAGAGAAGCTAATAAAAGAGGAAGATCTGGGTTCTTTCATAGCAGATTAA 3057 0.4302 MAESRRYVPNQQLDLEQILLEAQHRWLRPTEICEILRNYQKFLITPDPPVTPPAGSLFLFDRKALRYFRKDGHRWRKKKDGKTVKEAHEKLKAGSVDVLHCYYAHGEDNENFQRRSYWMLDEQLEHIVLVHYREIKEGYKTSTSVPRLPNAVPASQIGTIQGSSAPCLSQGNAPTVTGQISYASSPNTADWSGQTLSSEFEDGDSGDDPGTSSLAQPILGSVFYNASLPTHEASGFAGLSRNQLGSGLAGVHFSHGASTSVQDEIHGSSSSVHDQKFGFEQPNGADFITNKLTDARLDSDRTVQNFAARGDGLSPALDIKGLTAASQRAVQGPLEHNFHLVHPQFQNCSSSHVADTSTAHIENKSKEDGANNDASGELKKLDSFGRWMDKEIGGDCDDSLMASDSGNYWNTLDTQNDDKEVSSLSRHMQLDIDSLAPSLSQEQLFTINDFSPDWAYSEDETKVLIIGTFLGGMEHSTNTKWCCMFGEIEVSAEVLTNNVIRCHAPLHAPGRVPFYVTCSNRLACSEVREFEYREKPSRVAFSMAVRSTPEDDVQFQIQLAKMLHLGQERKWLDCSIEECDKCKIKSDIYSKKDDIKNDWEELEMAKDFIGNHVNPRDVLIKNLLKDRLFEWLVCKVHEGVRGPHVLDGKGQGVIHLAAALGYEWAMGPIIVAGVSPNFRDARGRTGLHWASYFGREETVIALVKLGTSPDAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEAHLSSHLCSLSPSENVMDSVSANIAAEKAAQTAVQNVDGVIEEQLSLKGSLAALRKSAHAAALIQAALRARSFRDRRLTRSNDDISEASLDLVALGSLNKVSKMGHFKDYLHSAAVKIQQKYRGWKGREDFLKIRSRIVKIQAHVRGHQVRKQYKKVVWSVGIVEKAILRWRRKGSGLRGFRLEKPIGNAVPEVGKTDEYDYLRVGRRQKFAGVEKALARVQSMVRHPEARDQYMRLVSKFDNLQIGDEGSSALQQAEKSEKLIKEEDLGSFIAD* 1019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0283 1018 ProSiteProfiles IQ motif profile. 877 901 IPR000048 GO:0005515
Vvi5g0283 1018 SUPERFAMILY E set domains 446 533 IPR014756 -
Vvi5g0283 1018 ProSiteProfiles IQ motif profile. 958 986 IPR000048 GO:0005515
Vvi5g0283 1018 Gene3D - 588 747 IPR036770 -
Vvi5g0283 1018 FunFam Calmodulin-binding transcription activator 2 440 537 - -
Vvi5g0283 1018 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 849 904 IPR027417 -
Vvi5g0283 1018 MobiDBLite consensus disorder prediction 178 200 - -
Vvi5g0283 1018 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Vvi5g0283 1018 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Vvi5g0283 1018 SUPERFAMILY Ankyrin repeat 642 744 IPR036770 -
Vvi5g0283 1018 ProSiteProfiles IQ motif profile. 854 883 IPR000048 GO:0005515
Vvi5g0283 1018 MobiDBLite consensus disorder prediction 178 212 - -
Vvi5g0283 1018 Gene3D Immunoglobulins 440 538 IPR013783 -
Vvi5g0283 1018 MobiDBLite consensus disorder prediction 259 277 - -
Vvi5g0283 1018 Gene3D - 852 901 - -
Vvi5g0283 1018 ProSiteProfiles Ankyrin repeat profile. 682 714 IPR002110 GO:0005515
Vvi5g0283 1018 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 14 985 - -
Vvi5g0283 1018 SMART iq_5 876 898 IPR000048 GO:0005515
Vvi5g0283 1018 SMART iq_5 853 875 IPR000048 GO:0005515
Vvi5g0283 1018 SMART iq_5 799 823 IPR000048 GO:0005515
Vvi5g0283 1018 Pfam IQ calmodulin-binding motif 855 873 IPR000048 GO:0005515
Vvi5g0283 1018 Pfam IQ calmodulin-binding motif 879 898 IPR000048 GO:0005515
Vvi5g0283 1018 FunFam Calmodulin-binding transcription activator 2 853 901 - -
Vvi5g0283 1018 Pfam IPT/TIG domain 446 532 IPR002909 -
Vvi5g0283 1018 SMART CG_1_2 18 136 IPR005559 GO:0003677
Vvi5g0283 1018 SMART ANK_2a 721 750 IPR002110 GO:0005515
Vvi5g0283 1018 SMART ANK_2a 682 711 IPR002110 GO:0005515
Vvi5g0283 1018 MobiDBLite consensus disorder prediction 259 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0283 Vvi-Chr5 2509748 2521522 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0283 59 988 CAMTA Transcription Factor Family AT2G22300 38.703 0.0 629
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Vvi5g0283 CG-1 3.2e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0283 K21596 - vvi:100240779 2005.72