Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0268 ATGGCATCCCTGGACTATTTAGAGGTTTTGGAACATCTGCCATTGGATCCTTGCCAGGTTTGTCAGAGGCTAATGGTACAAGGGCTACCAGGGACTGCATATTGCAGTGGGCCTTTTGATGTTGTTCATAAAGTAATGAAGGCTGAAGGGTTCCGTGGTATGTATAGAGGTTTTGGATTAACAGCTGTGACCCAATCTCCAGCGTATGCACTTTGGTGGGGTGTCTATGGTGCTGCTCAACACATGATCTGGAGGAGCTTGGACTACAGAGAAAATACAGAGAGGAAACCATCTCATTTGGAGATGGCAACTGTTCAAGCTTCAGCTGGAATTGTAGCTGGTGCTTGTTCCTCTGTTGTTACTACTCCCATAGACACTGTAAAAACACGACTCCAGGTCATGGATAATTATGGCGCTGGAAGGCCATCTGTAATGAAGACGGCAAAAACTCTTCTTAAAGAAGATGGATGGCGGGGCTTCTATAGAGGGTTTGGACCCCGCTTCTTAAATATGTCACTCTATGGAACCACGATGATTGTTACTTATGAACTGATAAAGAGATTATCCCTGAAGCAAGCGTGA 582 0.4519 MASLDYLEVLEHLPLDPCQVCQRLMVQGLPGTAYCSGPFDVVHKVMKAEGFRGMYRGFGLTAVTQSPAYALWWGVYGAAQHMIWRSLDYRENTERKPSHLEMATVQASAGIVAGACSSVVTTPIDTVKTRLQVMDNYGAGRPSVMKTAKTLLKEDGWRGFYRGFGPRFLNMSLYGTTMIVTYELIKRLSLKQA* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0268 193 ProSiteProfiles Solute carrier (Solcar) repeat profile. 101 188 IPR018108 -
Vvi5g0268 193 SUPERFAMILY Mitochondrial carrier 20 184 IPR023395 -
Vvi5g0268 193 Gene3D Mitochondrial carrier domain 14 193 IPR023395 -
Vvi5g0268 193 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 20 192 - -
Vvi5g0268 193 ProSiteProfiles Solute carrier (Solcar) repeat profile. 1 82 IPR018108 -
Vvi5g0268 193 Pfam Mitochondrial carrier protein 23 85 IPR018108 -
Vvi5g0268 193 Pfam Mitochondrial carrier protein 106 191 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0268 Vvi-Chr5 2400481 2402645 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0268 109 192 Chloroplast and Mitochondria Gene Families AT5G15640 35.870 1.24e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0268 K15121 - vvi:100242630 347.436